| Gene-centric metagenomics of the fiber-adherent bovine rumen microbiome reveals forage specific glycoside hydrolases JM Brulc, DA Antonopoulos, ME Berg Miller, MK Wilson, AC Yannarell, ... Proceedings of the National Academy of Sciences 106 (6), 1948-1953, 2009 | 873 | 2009 |
| Bacterial diversity in the oral cavity of 10 healthy individuals EM Bik, CD Long, GC Armitage, P Loomer, J Emerson, EF Mongodin, ... The ISME journal 4 (8), 962-974, 2010 | 828 | 2010 |
| Minimum information about an uncultivated virus genome (MIUViG) S Roux, EM Adriaenssens, BE Dutilh, EV Koonin, AM Kropinski, ... Nature biotechnology 37 (1), 29-37, 2019 | 569 | 2019 |
| Host-linked soil viral ecology along a permafrost thaw gradient JB Emerson, S Roux, JR Brum, B Bolduc, BJ Woodcroft, HB Jang, ... Nature microbiology 3 (8), 870-880, 2018 | 490* | 2018 |
| Schrödinger’s microbes: tools for distinguishing the living from the dead in microbial ecosystems JB Emerson, RI Adams, CMB Román, B Brooks, DA Coil, K Dahlhausen, ... Microbiome 5, 1-23, 2017 | 481 | 2017 |
| Seasonal variability in bacterial and fungal diversity of the near-surface atmosphere RM Bowers, N Clements, JB Emerson, C Wiedinmyer, MP Hannigan, ... Environmental science & technology 47 (21), 12097-12106, 2013 | 419 | 2013 |
| De novo metagenomic assembly reveals abundant novel major lineage of Archaea in hypersaline microbial communities P Narasingarao, S Podell, JA Ugalde, C Brochier-Armanet, JB Emerson, ... The ISME journal 6 (1), 81-93, 2012 | 412 | 2012 |
| Genome-centric view of carbon processing in thawing permafrost BJ Woodcroft, CM Singleton, JA Boyd, PN Evans, JB Emerson, ... Nature 560 (7716), 49-54, 2018 | 400 | 2018 |
| Benchmarking viromics: an in silico evaluation of metagenome-enabled estimates of viral community composition and diversity S Roux, JB Emerson, EA Eloe-Fadrosh, MB Sullivan PeerJ 5, e3817, 2017 | 291 | 2017 |
| Secrets of soil survival revealed by the genome sequence of Arthrobacter aurescens TC1 EF Mongodin, N Shapir, SC Daugherty, RT DeBoy, JB Emerson, ... PLoS genetics 2 (12), e214, 2006 | 281 | 2006 |
| Differential depth distribution of microbial function and putative symbionts through sediment-hosted aquifers in the deep terrestrial subsurface AJ Probst, B Ladd, JK Jarett, DE Geller-McGrath, CMK Sieber, ... Nature microbiology 3 (3), 328-336, 2018 | 270 | 2018 |
| Insights into Plant Cell Wall Degradation from the Genome Sequence of the Soil Bacterium Cellvibrio japonicus RT DeBoy, EF Mongodin, DE Fouts, LE Tailford, H Khouri, JB Emerson, ... Journal of bacteriology 190 (15), 5455-5463, 2008 | 239 | 2008 |
| Soil viruses are underexplored players in ecosystem carbon processing G Trubl, HB Jang, S Roux, JB Emerson, N Solonenko, DR Vik, L Solden, ... MSystems 3 (5), 10.1128/msystems. 00076-18, 2018 | 238 | 2018 |
| Genomic resolution of a cold subsurface aquifer community provides metabolic insights for novel microbes adapted to high CO2 concentrations AJ Probst, CJ Castelle, A Singh, CT Brown, K Anantharaman, I Sharon, ... Environmental microbiology 19 (2), 459-474, 2017 | 203 | 2017 |
| Viromes outperform total metagenomes in revealing the spatiotemporal patterns of agricultural soil viral communities C Santos-Medellin, LA Zinke, AM Ter Horst, DL Gelardi, SJ Parikh, ... The ISME journal 15 (7), 1956-1970, 2021 | 148 | 2021 |
| Solutions in microbiome engineering: prioritizing barriers to organism establishment MBN Albright, S Louca, DE Winkler, KL Feeser, SJ Haig, KL Whiteson, ... The ISME Journal 16 (2), 331-338, 2022 | 135 | 2022 |
| Biology of a widespread uncultivated archaeon that contributes to carbon fixation in the subsurface AJ Probst, T Weinmaier, K Raymann, A Perras, JB Emerson, T Rattei, ... Nature communications 5 (1), 5497, 2014 | 122 | 2014 |
| Metagenomic analysis of a high carbon dioxide subsurface microbial community populated by chemolithoautotrophs and bacteria and archaea from candidate phyla JB Emerson, BC Thomas, W Alvarez, JF Banfield Environmental microbiology 18 (6), 1686-1703, 2016 | 121 | 2016 |
| Impacts of flood damage on airborne bacteria and fungi in homes after the 2013 Colorado Front Range flood JB Emerson, PB Keady, TE Brewer, N Clements, EE Morgan, J Awerbuch, ... Environmental science & technology 49 (5), 2675-2684, 2015 | 118 | 2015 |
| Dynamic viral populations in hypersaline systems as revealed by metagenomic assembly JB Emerson, BC Thomas, K Andrade, EE Allen, KB Heidelberg, ... Applied and environmental microbiology 78 (17), 6309-6320, 2012 | 113 | 2012 |
