| Global monitoring of antimicrobial resistance based on metagenomics analyses of urban sewage RS Hendriksen, P Munk, P Njage, B Van Bunnik, L McNally, ... Nature communications 10 (1), 1124, 2019 | 848 | 2019 |
| Comparison of 61 Sequenced Escherichia coli Genomes O Lukjancenko, TM Wassenaar, DW Ussery Microbial ecology 60, 708-720, 2010 | 698 | 2010 |
| Benchmarking of methods for genomic taxonomy MV Larsen, S Cosentino, O Lukjancenko, D Saputra, S Rasmussen, ... Journal of clinical microbiology 52 (5), 1529-1539, 2014 | 373 | 2014 |
| Abundance and diversity of the faecal resistome in slaughter pigs and broilers in nine European countries P Munk, BE Knudsen, O Lukjancenko, ASR Duarte, L Van Gompel, ... Nature microbiology 3 (8), 898-908, 2018 | 312 | 2018 |
| Impact of sample type and DNA isolation procedure on genomic inference of microbiome composition BE Knudsen, L Bergmark, P Munk, O Lukjancenko, A Priemé, ... MSystems 1 (5), 10.1128/msystems. 00095-16, 2016 | 175 | 2016 |
| Genome sequencing identifies two nearly unchanged strains of persistent Listeria monocytogenes isolated at two different fish processing plants sampled 6 years apart A Holch, K Webb, O Lukjancenko, D Ussery, BM Rosenthal, L Gram Applied and environmental microbiology 79 (9), 2944-2951, 2013 | 153 | 2013 |
| Evaluation of methods for the concentration and extraction of viruses from sewage in the context of metagenomic sequencing MH Hjelmsø, M Hellmér, X Fernandez-Cassi, N Timoneda, ... PloS one 12 (1), e0170199, 2017 | 145 | 2017 |
| Comparative Genomics of Bifidobacterium, Lactobacillus and Related Probiotic Genera O Lukjancenko, DW Ussery, TM Wassenaar Microbial ecology 63, 651-673, 2012 | 132 | 2012 |
| Genomic variation in Salmonella enterica core genes for epidemiological typing P Leekitcharoenphon, O Lukjancenko, C Friis, FM Aarestrup, DW Ussery BMC genomics 13, 1-12, 2012 | 121 | 2012 |
| Is the Evolution of Salmonella enterica subsp. enterica Linked to Restriction-Modification Systems? L Roer, RS Hendriksen, P Leekitcharoenphon, O Lukjancenko, RS Kaas, ... Msystems 1 (3), 10.1128/msystems. 00009-16, 2016 | 110 | 2016 |
| A sampling and metagenomic sequencing-based methodology for monitoring antimicrobial resistance in swine herds P Munk, VD Andersen, L de Knegt, MS Jensen, BE Knudsen, ... Journal of Antimicrobial Chemotherapy 72 (2), 385-392, 2017 | 107 | 2017 |
| Genomic signature of multidrug-resistant Salmonella enterica serovar Typhi isolates related to a massive outbreak in Zambia between 2010 and 2012 RS Hendriksen, P Leekitcharoenphon, O Lukjancenko, ... Journal of clinical microbiology 53 (1), 262-272, 2015 | 105 | 2015 |
| MGmapper: reference based mapping and taxonomy annotation of metagenomics sequence reads TN Petersen, O Lukjancenko, MCF Thomsen, M Maddalena Sperotto, ... PloS one 12 (5), e0176469, 2017 | 84 | 2017 |
| Sialylated human milk oligosaccharides program cognitive development through a non-genomic transmission mode J Hauser, E Pisa, A Arias Vásquez, F Tomasi, A Traversa, V Chiodi, ... Molecular Psychiatry 26 (7), 2854-2871, 2021 | 73 | 2021 |
| Bifidobacterium breve Bif195 protects against small-intestinal damage caused by acetylsalicylic acid in healthy volunteers B Mortensen, C Murphy, J O’Grady, M Lucey, G Elsafi, L Barry, ... Gastroenterology 157 (3), 637-646. e4, 2019 | 72 | 2019 |
| Veillonella, Firmicutes: Microbes disguised as Gram negatives T Vesth, A Ozen, SC Andersen, RS Kaas, O Lukjancenko, J Bohlin, ... Standards in genomic sciences 9, 431-448, 2013 | 71 | 2013 |
| Infant formula with a specific blend of five human milk oligosaccharides drives the gut microbiota development and improves gut maturation markers: A randomized controlled trial M Bosheva, I Tokodi, A Krasnow, HK Pedersen, O Lukjancenko, ... Frontiers in nutrition 9, 920362, 2022 | 66 | 2022 |
| Using WGS to identify antibiotic resistance genes and predict antimicrobial resistance phenotypes in MDR Acinetobacter baumannii in Tanzania HH Kumburu, T Sonda, M van Zwetselaar, P Leekitcharoenphon, ... Journal of Antimicrobial Chemotherapy 74 (6), 1484-1493, 2019 | 61 | 2019 |
| Global Sewage Surveillance project consortium RS Hendriksen, P Munk, P Njage, B Van Bunnik, L McNally, ... Amid C, Cochrane G, Sicheritz-Ponten T, Schmitt H, Alvarez JRM, Aidara-Kane …, 2019 | 59 | 2019 |
| Quality scores for 32,000 genomes ML Land, D Hyatt, SR Jun, GH Kora, LJ Hauser, O Lukjancenko, ... Standards in genomic sciences 9, 1-10, 2014 | 55 | 2014 |
