| A compact vocabulary of paratope-epitope interactions enables predictability of antibody-antigen binding R Akbar, PA Robert, M Pavlović, JR Jeliazkov, I Snapkov, A Slabodkin, ... Cell Reports 34 (11), 2021 | 188 | 2021 |
| dipSPAdes: assembler for highly polymorphic diploid genomes Y Safonova, A Bankevich, PA Pevzner Journal of Computational Biology 22 (6), 528-545, 2015 | 105 | 2015 |
| Broadly neutralizing anti-S2 antibodies protect against all three human betacoronaviruses that cause deadly disease P Zhou, G Song, H Liu, M Yuan, W He, N Beutler, X Zhu, VT Longping, ... Immunity 56 (3), 669-686. e7, 2023 | 87 | 2023 |
| IgRepertoireConstructor: a novel algorithm for antibody repertoire construction and immunoproteogenomics analysis Y Safonova, S Bonissone, E Kurpilyansky, E Starostina, A Lapidus, ... Bioinformatics 31 (12), i53-i61, 2015 | 60 | 2015 |
| Vaccine genetics of IGHV1-2 VRC01-class broadly neutralizing antibody precursor naïve human B cells JH Lee, L Toy, JT Kos, Y Safonova, WR Schief, C Havenar-Daughton, ... NPJ vaccines 6 (1), 113, 2021 | 58 | 2021 |
| Diversity in immunogenomics: the value and the challenge K Peng, Y Safonova, M Shugay, AB Popejoy, OL Rodriguez, F Breden, ... Nature methods 18 (6), 588-591, 2021 | 56 | 2021 |
| Targeted isolation of diverse human protective broadly neutralizing antibodies against SARS-like viruses W He, R Musharrafieh, G Song, K Dueker, LV Tse, DR Martinez, ... Nature immunology 23 (6), 960-970, 2022 | 55 | 2022 |
| Genetic variation in the immunoglobulin heavy chain locus shapes the human antibody repertoire OL Rodriguez, Y Safonova, CA Silver, K Shields, WS Gibson, JT Kos, ... Nature communications 14 (1), 4419, 2023 | 50 | 2023 |
| Reconstructing antibody repertoires from error-prone immunosequencing reads A Shlemov, S Bankevich, A Bzikadze, MA Turchaninova, Y Safonova, ... The Journal of Immunology 199 (9), 3369-3380, 2017 | 48* | 2017 |
| Extraordinary genetic diversity in a wood decay mushroom MA Baranova, MD Logacheva, AA Penin, VB Seplyarskiy, YY Safonova, ... Molecular biology and evolution 32 (10), 2775-2783, 2015 | 47 | 2015 |
| IgSimulator: a versatile immunosequencing simulator Y Safonova, A Lapidus, J Lill Bioinformatics 31 (19), 3213-3215, 2015 | 36 | 2015 |
| De novo Inference of Diversity Genes and Analysis of Non-canonical V(DD)J Recombination in Immunoglobulins Y Safonova, PA Pevzner Frontiers in immunology 10, 987, 2019 | 34 | 2019 |
| Trace reconstruction problems in computational biology V Bhardwaj, PA Pevzner, C Rashtchian, Y Safonova IEEE Transactions on Information Theory 67 (6), 3295-3314, 2020 | 31 | 2020 |
| Broadly neutralizing antibodies to SARS-related viruses can be readily induced in rhesus macaques W He, M Yuan, S Callaghan, R Musharrafieh, G Song, M Silva, N Beutler, ... Science translational medicine 14 (657), eabl9605, 2022 | 29 | 2022 |
| Broadly neutralizing anti-S2 antibodies protect against all three human betacoronaviruses that cause severe disease P Zhou, G Song, W He, N Beutler, VT Longping, DR Martinez, A Schäfer, ... bioRxiv, 2022 | 23 | 2022 |
| Gene prediction in the immunoglobulin loci V Sirupurapu, Y Safonova, PA Pevzner Genome research 32 (6), 1152-1169, 2022 | 18 | 2022 |
| Variations in antibody repertoires correlate with vaccine responses Y Safonova, SB Shin, L Kramer, J Reecy, CT Watson, TPL Smith, ... Genome research 32 (4), 791-804, 2022 | 17 | 2022 |
| V (DD) J recombination is an important and evolutionarily conserved mechanism for generating antibodies with unusually long CDR3s Y Safonova, PA Pevzner Genome research 30 (11), 1547-1558, 2020 | 17 | 2020 |
| Complete sequencing of ape genomes DA Yoo, A Rhie, P Hebbar, F Antonacci, GA Logsdon, SJ Solar, D Antipov, ... BioRxiv, 2024 | 13 | 2024 |
| Automated analysis of immunosequencing datasets reveals novel immunoglobulin D genes across diverse species V Bhardwaj, M Franceschetti, R Rao, PA Pevzner, Y Safonova PLoS computational biology 16 (4), e1007837, 2020 | 13 | 2020 |
Pavel PevznerUniversity of California at San DiegoE-mailová adresa ověřena na: ucsd.edu