Sledovat
Alexandre Almeida
Název
Citace
Citace
Rok
A new genomic blueprint of the human gut microbiota
A Almeida, AL Mitchell, M Boland, SC Forster, GB Gloor, A Tarkowska, ...
Nature 568 (7753), 499-504, 2019
13102019
A unified catalog of 204,938 reference genomes from the human gut microbiome
A Almeida, S Nayfach, M Boland, F Strozzi, M Beracochea, ZJ Shi, ...
Nature Biotechnology 39, 105–114, 2021
10112021
MGnify: the microbiome analysis resource in 2020
AL Mitchell, A Almeida, M Beracochea, M Boland, J Burgin, G Cochrane, ...
Nucleic Acids Research 48 (D1), D570-D578, 2020
5912020
A human gut bacterial genome and culture collection for improved metagenomic analyses
SC Forster, N Kumar, BO Anonye, A Almeida, E Viciani, MD Stares, ...
Nature Biotechnology 37 (2), 186-192, 2019
5482019
Massive expansion of human gut bacteriophage diversity
LF Camarillo-Guerrero, A Almeida, G Rangel-Pineros, RD Finn, ...
Cell 184 (4), 1098-1109.e9, 2021
4822021
Microbial abundance, activity and population genomic profiling with mOTUs2
A Milanese, DR Mende, L Paoli, G Salazar, HJ Ruscheweyh, M Cuenca, ...
Nature Communications 10 (1), 1014, 2019
4352019
Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research
F Hufsky, K Lamkiewicz, A Almeida, A Aouacheria, C Arighi, A Bateman, ...
Briefings in Bioinformatics, bbaa232, 2021
1572021
Benchmarking taxonomic assignments based on 16S rRNA gene profiling of the microbiota from commonly sampled environments
A Almeida, AL Mitchell, A Tarkowska, RD Finn
GigaScience 7 (5), 2018
1382018
A catalogue of 1,167 genomes from the human gut archaeome
CM Chibani, A Mahnert, G Borrel, A Almeida, A Werner, JF Brugère, ...
Nature Microbiology 7, 48–61, 2022
1302022
Integrating cultivation and metagenomics for a multi-kingdom view of skin microbiome diversity and functions
S Saheb Kashaf, DM Proctor, C Deming, P Saary, M Hölzer, ME Taylor, ...
Nature Microbiology 7, 169-179, 2022
1282022
The Mouse Gastrointestinal Bacteria Catalogue enables translation between the mouse and human gut microbiotas via functional mapping
BS Beresford-Jones, SC Forster, MD Stares, G Notley, E Viciani, ...
Cell Host & Microbe 30, 124-138.e8, 2022
1112022
Phylogenomics of expanding uncultured environmental Tenericutes provides insights into their pathogenicity and evolutionary relationship with Bacilli
Y Wang, JM Huang, YL Zhou, A Almeida, RD Finn, A Danchin, LS He
BMC Genomics 21, 408, 2020
922020
A compendium of 32,277 metagenome-assembled genomes and over 80 million genes from the early-life human gut microbiome
S Zeng, D Patangia, A Almeida, Z Zhou, D Mu, R Paul Ross, C Stanton, ...
Nature Communications 13 (1), 5139, 2022
602022
The Bacteroidetes Aequorivita sp. and Kaistella jeonii produce promiscuous esterases with PET-hydrolyzing activity
H Zhang, P Pérez-García, RF Dierkes, V Applegate, J Schumacher, ...
Frontiers in Microbiology 12, 3874, 2022
60*2022
Host adaptation in gut Firmicutes is associated with sporulation loss and altered transmission cycle
HP Browne, A Almeida, N Kumar, K Vervier, AT Adoum, E Viciani, ...
Genome Biology 22, 204, 2021
542021
Persistence of a dominant bovine lineage of group B Streptococcus reveals genomic signatures of host adaptation
A Almeida, C Alves‐Barroco, E Sauvage, R Bexiga, P Albuquerque, ...
Environmental Microbiology 18 (11), 4216-4229, 2016
462016
Recovering prokaryotic genomes from host-associated, short-read shotgun metagenomic sequencing data
SS Kashaf, A Almeida, JA Segre, RD Finn
Nature Protocols 16 (5), 2520-2541, 2021
392021
Staphylococcal diversity in atopic dermatitis from an individual to a global scale
SS Kashaf, CP Harkins, C Deming, P Joglekar, S Conlan, CJ Holmes, ...
Cell Host & Microbe 31 (4), 578-592. e6, 2023
362023
Baseline gut microbiota composition is associated with Schistosoma mansoni infection burden in rodent models
A Cortes, S Clare, A Costain, A Almeida, C McCarthy, K Harcourt, ...
Frontiers in Immunology, 2020
362020
MGnify genomes: a resource for biome-specific microbial genome catalogues
TA Gurbich, A Almeida, M Beracochea, T Burdett, J Burgin, G Cochrane, ...
Journal of Molecular Biology 435 (14), 168016, 2023
352023
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Články 1–20