| Best practices for single-cell analysis across modalities L Heumos, AC Schaar, C Lance, A Litinetskaya, F Drost, L Zappia, ... Nature Reviews Genetics 24 (8), 550-572, 2023 | 577 | 2023 |
| decoupleR: ensemble of computational methods to infer biological activities from omics data P Badia-i-Mompel, J Vélez Santiago, J Braunger, C Geiss, D Dimitrov, ... Bioinformatics advances 2 (1), vbac016, 2022 | 381 | 2022 |
| Gene regulatory network inference in the era of single-cell multi-omics P Badia-i-Mompel, L Wessels, S Müller-Dott, R Trimbour, ... Nature Reviews Genetics 24 (11), 739-754, 2023 | 192 | 2023 |
| Molecular consequences of SARS-CoV-2 liver tropism N Wanner, G Andrieux, P Badia-i-Mompel, C Edler, S Pfefferle, ... Nature metabolism 4 (3), 310-319, 2022 | 155 | 2022 |
| Expanding the coverage of regulons from high-confidence prior knowledge for accurate estimation of transcription factor activities S Müller-Dott, E Tsirvouli, M Vazquez, RO Ramirez Flores, ... Nucleic Acids Research 51 (20), 10934-10949, 2023 | 120 | 2023 |
| Bioactivity descriptors for uncharacterized chemical compounds M Bertoni, M Duran-Frigola, P Badia-i-Mompel, E Pauls, M Orozco-Ruiz, ... Nature Communications 12 (1), 3932, 2021 | 70 | 2021 |
| A community challenge for a pancancer drug mechanism of action inference from perturbational profile data EF Douglass, RJ Allaway, B Szalai, W Wang, T Tian, A Fernández-Torras, ... Cell Reports Medicine 3 (1), 2022 | 49 | 2022 |
| Cell type mapping reveals tissue niches and interactions in subcortical multiple sclerosis lesions C Lerma-Martin, P Badia-i-Mompel, RO Ramirez Flores, P Sekol, ... Nature Neuroscience, 1-12, 2024 | 18* | 2024 |
| LIANA+ provides an all-in-one framework for cell–cell communication inference D Dimitrov, PSL Schäfer, E Farr, P Rodriguez-Mier, S Lobentanzer, ... Nature Cell Biology 26 (9), 1613-1622, 2024 | 15 | 2024 |
| decoupleR: ensemble of computational methods to infer biological activities from omics data. Bioinform Adv. 2022; 2 (1): vbac016 P Badia-i-Mompel, J Vélez Santiago, J Braunger, C Geiss, D Dimitrov, ... | 13 | |
| Spatially resolved multiomics on the neuronal effects induced by spaceflight in mice Y Masarapu, E Cekanaviciute, Z Andrusivova, JO Westholm, Å Björklund, ... Nature Communications 15 (1), 4778, 2024 | 9* | 2024 |
| Bioactivity profile similarities to expand the repertoire of COVID-19 drugs M Duran-Frigola, M Bertoni, R Blanco, V Martínez, E Pauls, V Alcalde, ... Journal of Chemical Information and Modeling 60 (12), 5730-5734, 2020 | 6 | 2020 |
| Assessing the impact of transcriptomics data analysis pipelines on downstream functional enrichment results V Paton, RO Ramirez Flores, A Gabor, P Badia-i-Mompel, J Tanevski, ... Nucleic Acids Research 52 (14), 8100-8111, 2024 | 2 | 2024 |
| Defining the molecular response to ischemia-reperfusion injury and remote ischemic preconditioning in human kidney transplantation J Nordström, P Badia-I-Mompel, A Witasp, A Schwarz, P Evenepoel, ... Plos one 19 (10), e0311613, 2024 | | 2024 |
| Input data P Badia-i-Mompel, J Vélez-Santiago | | 2024 |
| Comparison and evaluation of methods to infer gene regulatory networks from multimodal single-cell data P Badia-i-Mompel, R Casals-Franch, L Wessels, S Müller-Dott, ... bioRxiv, 2024.12. 20.629764, 2024 | | 2024 |
Julio Saez RodriguezHeidelberg UniversityE-mailová adresa ověřena na: uni-heidelberg.de