| Integrated intra‐and intercellular signaling knowledge for multicellular omics analysis D Türei, A Valdeolivas, L Gul, N Palacio‐Escat, M Klein, O Ivanova, ... Molecular systems biology 17 (3), e9923, 2021 | 265 | 2021 |
| SARS-CoV-2 causes a different cytokine response compared to other cytokine storm-causing respiratory viruses in severely ill patients M Olbei, I Hautefort, D Modos, A Treveil, M Poletti, L Gul, ... Frontiers in immunology 12, 629193, 2021 | 122 | 2021 |
| COVID19 Disease Map, a computational knowledge repository of virus–host interaction mechanisms M Ostaszewski, A Niarakis, A Mazein, I Kuperstein, R Phair, ... Molecular systems biology 17 (10), e10387, 2021 | 100 | 2021 |
| Regulatory network analysis of Paneth cell and goblet cell enriched gut organoids using transcriptomics approaches A Treveil, P Sudhakar, ZJ Matthews, T Wrzesiński, EJ Jones, J Brooks, ... Molecular omics 16 (1), 39-58, 2020 | 46 | 2020 |
| ULK1 and ULK2 are less redundant than previously thought: computational analysis uncovers distinct regulation and functions of these autophagy induction proteins A Demeter, MC Romero-Mulero, L Csabai, M Ölbei, P Sudhakar, ... Scientific reports 10 (1), 10940, 2020 | 42 | 2020 |
| The gut microbiota and metabolome are associated with diminished COVID-19 vaccine-induced antibody responses in immunosuppressed inflammatory bowel disease patients JL Alexander, BH Mullish, NP Danckert, Z Liu, ML Olbei, A Saifuddin, ... EBioMedicine 88, 2023 | 39 | 2023 |
| SignaLink3: a multi-layered resource to uncover tissue-specific signaling networks L Csabai, D Fazekas, T Kadlecsik, M Szalay-Bekő, B Bohár, M Madgwick, ... Nucleic acids research 50 (D1), D701-D709, 2022 | 35 | 2022 |
| SalmoNet, an integrated network of ten Salmonella enterica strains reveals common and distinct pathways to host adaptation A Métris, P Sudhakar, D Fazekas, A Demeter, E Ari, M Olbei, P Branchu, ... NPJ systems biology and applications 3 (1), 31, 2017 | 33 | 2017 |
| Evolution of regulatory networks associated with traits under selection in cichlids TK Mehta, C Koch, W Nash, SA Knaack, P Sudhakar, M Olbei, ... Genome Biology 22, 1-28, 2021 | 25 | 2021 |
| SignaLink: multilayered regulatory networks L Csabai, M Ölbei, A Budd, T Korcsmáros, D Fazekas Computational Cell Biology: Methods and Protocols, 53-73, 2018 | 20 | 2018 |
| ViralLink: An integrated workflow to investigate the effect of SARS-CoV-2 on intracellular signalling and regulatory pathways A Treveil, B Bohar, P Sudhakar, L Gul, L Csabai, M Olbei, M Poletti, ... PLOS Computational Biology 17 (2), e1008685, 2021 | 14 | 2021 |
| CytokineLink: a cytokine communication map to analyse immune responses—case studies in inflammatory bowel disease and COVID-19 M Olbei, JP Thomas, I Hautefort, A Treveil, B Bohar, M Madgwick, L Gul, ... Cells 10 (9), 2242, 2021 | 13 | 2021 |
| Immune checkpoint inhibitor-induced colitis is mediated by polyfunctional lymphocytes and is dependent on an IL23/IFNγ axis JW Lo, D Cozzetto, JL Alexander, NP Danckert, M Madgwick, N Knox, ... Nature Communications 14 (1), 6719, 2023 | 7 | 2023 |
| Analysing MiRNA-target gene networks in inflammatory bowel disease and other complex diseases using transcriptomic data JP Thomas, M Ölbei, J Brooks-Warburton, T Korcsmaros, D Modos Genes 13 (2), 370, 2022 | 6 | 2022 |
| SARS-CoV-2 Causes a Different Cytokine Response Compared to Other Cytokine Storm-Causing Respiratory Viruses in Severely Ill Patients. Front Immunol 12: 629193 M Olbei, I Hautefort, D Modos, A Treveil, M Poletti, L Gul, ... | 6 | 2021 |
| Sherlock: an open-source data platform to store, analyze and integrate Big Data for computational biologists B Bohar, D Fazekas, M Madgwick, L Csabai, M Olbei, T Korcsmáros, ... F1000Research 10, 409, 2023 | 5 | 2023 |
| Mapping the epithelial–immune cell interactome upon infection in the gut and the upper airways M Poletti, A Treveil, L Csabai, L Gul, D Modos, M Madgwick, M Olbei, ... NPJ Systems Biology and Applications 8 (1), 15, 2022 | 5 | 2022 |
| Evolution of regulatory networks controlling adaptive traits in cichlids TK Mehta, C Koch, W Nash, SA Knaack, P Sudhakar, M Olbei, ... BioRxiv, 496034, 2018 | 5 | 2018 |
| AutophagyNet: high-resolution data source for the analysis of autophagy and its regulation L Csabai, B Bohár, D Türei, S Prabhu, L Földvári-Nagy, M Madgwick, ... Autophagy 20 (1), 188-201, 2024 | 4 | 2024 |
| Multilayered networks of SalmoNet2 enable strain comparisons of the salmonella genus on a molecular level M Olbei, B Bohar, D Fazekas, M Madgwick, P Sudhakar, I Hautefort, ... Msystems 7 (4), e01493-21, 2022 | 2 | 2022 |
