| Transcriptional regulation of plant cell wall degradation by filamentous fungi N Aro, T Pakula, M Penttilä FEMS microbiology reviews 29 (4), 719-739, 2005 | 769 | 2005 |
| Screening of candidate regulators for cellulase and hemicellulase production in Trichoderma reesei and identification of a factor essential for cellulase production M Häkkinen, MJ Valkonen, A Westerholm-Parvinen, N Aro, M Arvas, ... Biotechnology for biofuels 7, 1-21, 2014 | 253 | 2014 |
| Re-annotation of the CAZy genes of Trichoderma reesei and transcription in the presence of lignocellulosic substrates M Häkkinen, M Arvas, M Oja, N Aro, M Penttilä, M Saloheimo, TM Pakula Microbial cell factories 11, 1-26, 2012 | 190 | 2012 |
| The effects of drugs inhibiting protein secretion in the filamentous fungus Trichoderma reesei: evidence for down-regulation of genes that encode secreted proteins in the … TM Pakula, M Laxell, A Huuskonen, J Uusitalo, M Saloheimo, M Penttilä Journal of Biological Chemistry 278 (45), 45011-45020, 2003 | 183 | 2003 |
| Post-genomic insights into the plant polysaccharide degradation potential of Aspergillus nidulans and comparison to Aspergillus niger and Aspergillus oryzae PM Coutinho, MR Andersen, K Kolenova, I Benoit, BS Gruben, ... Fungal Genetics and Biology 46 (1), S161-S169, 2009 | 168 | 2009 |
| Transformation System for Hypocrea jecorina (Trichoderma reesei) That Favors Homologous Integration and Employs Reusable Bidirectionally Selectable Markers MG Steiger, M Vitikainen, P Uskonen, K Brunner, G Adam, T Pakula, ... Applied and environmental microbiology 77 (1), 114-121, 2011 | 163 | 2011 |
| The cargo and the transport system: secreted proteins and protein secretion in Trichoderma reesei (Hypocrea jecorina) M Saloheimo, TM Pakula Microbiology 158 (1), 46-57, 2012 | 155 | 2012 |
| The effect of specific growth rate on protein synthesis and secretion in the filamentous fungus Trichoderma reesei TM Pakula, K Salonen, J Uusitalo, M Penttila Microbiology 151 (1), 135-143, 2005 | 139 | 2005 |
| The 2008 update of the Aspergillus nidulans genome annotation: a community effort JR Wortman, JM Gilsenan, V Joardar, J Deegan, J Clutterbuck, ... Fungal Genetics and Biology 46 (1), S2-S13, 2009 | 137 | 2009 |
| Array comparative genomic hybridization analysis of Trichoderma reesei strains with enhanced cellulase production properties M Vitikainen, M Arvas, T Pakula, M Oja, M Penttilä, M Saloheimo BMC genomics 11, 1-16, 2010 | 104 | 2010 |
| Common features and interesting differences in transcriptional responses to secretion stress in the fungi Trichoderma reesei and Saccharomyces cerevisiae M Arvas, T Pakula, K Lanthaler, M Saloheimo, M Valkonen, T Suortti, ... BMC genomics 7, 1-18, 2006 | 104 | 2006 |
| Genome organization of membrane-containing bacteriophage PRD1 JKH Bamford, AL Hänninen, TM Pakula, PM Ojala, N Kalkkinen, ... Virology 183 (2), 658-676, 1991 | 92 | 1991 |
| Endoplasmic reticulum stress leads to the selective transcriptional downregulation of the glucoamylase gene in Aspergillus niger H Al‐Sheikh, AJ Watson, GA Lacey, PJ Punt, DA MacKenzie, DJ Jeenes, ... Molecular Microbiology 53 (6), 1731-1742, 2004 | 91 | 2004 |
| Correlation of gene expression and protein production rate-a system wide study M Arvas, T Pakula, B Smit, J Rautio, H Koivistoinen, P Jouhten, E Lindfors, ... BMC genomics 12, 1-25, 2011 | 76 | 2011 |
| Cloning and Characterization of the Glucosidase II Alpha Subunit Gene of Trichoderma reesei: a Frameshift Mutation Results in the Aberrant Glycosylation Profile … S Geysens, T Pakula, J Uusitalo, I Dewerte, M Penttilä, R Contreras Applied and environmental microbiology 71 (6), 2910-2924, 2005 | 72 | 2005 |
| Influence of growth temperature on the production of antibody Fab fragments in different microbes: a host comparative analysis M Dragosits, G Frascotti, L Bernard‐Granger, F Vazquez, M Giuliani, ... Biotechnology progress 27 (1), 38-46, 2011 | 69 | 2011 |
| Monitoring the kinetics of glycoprotein synthesis and secretion in the filamentous fungus Trichoderma reesei: cellobiohydrolase I (CBHI) as a model protein TM Pakula, J Uusitalo, M Saloheimo, K Salonen, RJ Aarts, M Penttila Microbiology 146 (1), 223-232, 2000 | 65 | 2000 |
| Protein production and induction of the unfolded protein response in Trichoderma reesei strain Rut‐C30 and its transformant expressing endoglucanase I with a hydrophobic tag A Collén, M Saloheimo, M Bailey, M Penttilä, TM Pakula Biotechnology and bioengineering 89 (3), 335-344, 2005 | 55 | 2005 |
| The effects of extracellular pH and of the transcriptional regulator PACI on the transcriptome of Trichoderma reesei M Häkkinen, D Sivasiddarthan, N Aro, M Saloheimo, TM Pakula Microbial cell factories 14, 1-15, 2015 | 54 | 2015 |
| Characterization of Secretory Genes ypt1/yptA and nsf1/nsfA from Two Filamentous Fungi: Induction of Secretory Pathway Genes of Trichoderma reesei under … M Saloheimo, H Wang, M Valkonen, T Vasara, A Huuskonen, M Riikonen, ... Applied and environmental microbiology 70 (1), 459-467, 2004 | 42 | 2004 |
