The 3D organization of chromatin explains evolutionary fragile genomic regions C Berthelot, M Muffato, J Abecassis, HR Crollius Cell reports 10 (11), 1913-1924, 2015 | 67 | 2015 |
Assessing reliability of intra-tumor heterogeneity estimates from single sample whole exome sequencing data J Abécassis, AS Hamy, C Laurent, B Sadacca, H Bonsang-Kitzis, F Reyal, ... PloS one 14 (11), e0224143, 2019 | 27 | 2019 |
CloneSig can jointly infer intra-tumor heterogeneity and mutational signature activity in bulk tumor sequencing data J Abécassis, F Reyal, JP Vert Nature Communications 12 (1), 1-16, 2021 | 22* | 2021 |
A Stromal Immune Module Correlated with the Response to Neoadjuvant Chemotherapy, Prognosis and Lymphocyte Infiltration in HER2-Positive Breast … AS Hamy, H Bonsang-Kitzis, M Lae, M Moarii, B Sadacca, A Pinheiro, ... PloS one 11 (12), e0167397, 2016 | 12 | 2016 |
Evolution of synchronous female bilateral breast cancers and response to treatment AS Hamy, J Abécassis, K Driouch, L Darrigues, M Vandenbogaert, ... Nature Medicine 29 (3), 646-655, 2023 | 10 | 2023 |
New insight for pharmacogenomics studies from the transcriptional analysis of two large-scale cancer cell line panels B Sadacca, AS Hamy, C Laurent, P Gestraud, H Bonsang-Kitzis, ... Scientific reports 7 (1), 15126, 2017 | 9 | 2017 |
Concomitant medication, comorbidity and survival in patients with breast cancer E Dumas, B Grandal Rejo, P Gougis, S Houzard, J Abécassis, F Jochum, ... Nature Communications 15 (1), 2966, 2024 | 8 | 2024 |
Step-by-step causal analysis of EHRs to ground decision-making M Doutreligne, T Struja, J Abecassis, C Morgand, LA Celi, G Varoquaux PLOS Digital Health 4 (2), e0000721, 2025 | 4* | 2025 |
Survival Models: Proper Scoring Rule and Stochastic Optimization with Competing Risks J Alberge, V Maladière, O Grisel, J Abécassis, G Varoquaux arXiv preprint arXiv:2410.16765, 2024 | 4* | 2024 |
No impact of smoking status on breast cancer tumor infiltrating lymphocytes, response to neoadjuvant chemotherapy and prognosis V Simon, L Laot, E Laas, S Rozette, J Guerin, T Balezeau, M Nicolas, ... Cancers 12 (10), 2943, 2020 | 4 | 2020 |
From prediction to prescription: Machine learning and Causal Inference J Abécassis, E Dumas, J Alberge, G Varoquaux | 1 | 2024 |
Operational challenges of building a million-patient cohort from EHRs: The COhort of DIabetic patients (CODIA) on the AP-HP EDS J Abécassis, T Jolivet, A Bergès, E Liu, JB Julla, Y Abouleka, J Alberge, ... journée de l'Atelier TIDS (Traitement Informatique des Données de Santé) du …, 2024 | 1 | 2024 |
Causality: fundamental principles and tools I Balelli, S Al-Ali, E Dumas, J Abecassis Trustworthy AI in Medical Imaging, 297-314, 2025 | | 2025 |
Taux de mortalité et facteurs de risque associés chez les patients diabétiques hospitalisés pour plaie du pied: étude de cohorte historique sur l'EDS-APHP T Jolivet, JB Julla, Y Abouleka, A Berges, G Varoquaux, J Abecassis, ... Journal of Epidemiology and Population Health 72, 202255, 2024 | | 2024 |
Abstract P3-07-06: Comedications at Breast Cancer diagnosis impact overall survival: results from the ADRENALINE (Atlas for DRug and brEast caNcer survivAL INtEraction) study … E Dumas, B Grandal, P Gougis, S Houzard, A Latouche, A Toussaint, ... Cancer Research 83 (5_Supplement), P3-07-06-P3-07-06, 2023 | | 2023 |
Statistical methods for deciphering intra-tumor hereterogeneity: challenges and opportunities for cancer clinical management J Abecassis Université Paris sciences et lettres, 2020 | | 2020 |
Identification of a predictive and prognostic immune stromal module associated with lymphocytic infiltrate in HER2-positive breast cancers Abstracts AS Hamy-Petit, H Bonsang-Kitzis, M Lae, M Moarii, B Sadacca, ... BULLETIN DU CANCER 103 (6), S110-S111, 2016 | | 2016 |
Double Debiased Machine Learning for Mediation Analysis with Continuous Treatments H Zenati, J Abécassis, J Josse, B Thirion The 28th International Conference on Artificial Intelligence and Statistics, 0 | | |
Causal mediation analysis with one or multiple mediators: a comparative study J Abécassis, J Josse, B Thirion | | |