Jakub Westholm

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Eric C. LaiMember, Sloan-Kettering InstituteE-mailová adresa ověřena na: mskcc.org
Joakim LundebergSciLifeLab, KTH Royal Institute of TechnologyE-mailová adresa ověřena na: scilifelab.se
Stefania GiacomelloSciLifeLab/KTHE-mailová adresa ověřena na: scilifelab.se
Adam AmeurAssociate Professor, SciLifeLab/Uppsala University, SwedenE-mailová adresa ověřena na: igp.uu.se
Patrik StåhlKTH, Royal Institute of TechnologyE-mailová adresa ověřena na: kth.se
Fredrik SalménKTH Royal Institute of TechnologyE-mailová adresa ověřena na: scilifelab.se
Sanja VickovicNYGC, Columbia University, Uppsala UniversityE-mailová adresa ověřena na: nygenome.org
Pedro MiuraUConn HealthE-mailová adresa ověřena na: uchc.edu
Qi Daistockholm universityE-mailová adresa ověřena na: su.se
Jan KomorowskiUppsala University, Sweden & IPI, Polish Academy of Sciences, PolandE-mailová adresa ověřena na: icm.uu.se
Nicolas RobineDirector, Computational Biology. New York Genome CenterE-mailová adresa ověřena na: nygenome.org
Sten LinnarssonProfessor, Karolinska InstitutetE-mailová adresa ověřena na: ki.se
Mikael HussForskare i bioinformatik, Stockholms universitetE-mailová adresa ověřena na: scilifelab.se
Brenton GraveleyProfessor and Chair of Genetics and Genome Sciences, UCONN Health, Institute for SystemsE-mailová adresa ověřena na: uchc.edu
Susan CelnikerE-mailová adresa ověřena na: lbl.gov
Erik LadewigColumbia UniversityE-mailová adresa ověřena na: columbia.edu
Piero Sanfilippo, Ph.D.University of California, Los AngelesE-mailová adresa ověřena na: mednet.ucla.edu
Peter SmibertSenior Manager, Technology Innovation, New York Genome CenterE-mailová adresa ověřena na: nygenome.org
Ammar S. NaqviChildren's Hospital of PhiladelphiaE-mailová adresa ověřena na: email.chop.edu
Lena Claesson-WelshUppsala UniversityE-mailová adresa ověřena na: igp.uu.se

Sledovat

Jakub Westholm

Researcher, SciLifeLab/Stockholm University

E-mailová adresa ověřena na: scilifelab.se

Computational biology Genomics Gene Regulation


Název Seřadit podle citací Seřadit podle roku Seřadit podle názvu	Citace Citace	Rok
Visualization and analysis of gene expression in tissue sections by spatial transcriptomics PL Ståhl, F Salmén, S Vickovic, A Lundmark, J Fernández Navarro, ... Science 353 (6294), 78-82, 2016	2922	2016
Genome-wide analysis of drosophila circular RNAs reveals their structural and sequence properties and age-dependent neural accumulation JO Westholm, P Miura, S Olson, S Shenker, B Joseph, P Sanfilippo, ... Cell reports 9 (5), 1966-1980, 2014	994	2014
Vive la différence: biogenesis and evolution of microRNAs in plants and animals MJ Axtell, JO Westholm, EC Lai Genome biology 12 (4), 221, 2011	620	2011
Mirtrons: microRNA biogenesis via splicing JO Westholm, EC Lai Biochimie, 2011	429	2011
Widespread and extensive lengthening of 3′ UTRs in the mammalian brain P Miura, S Shenker, C Andreu-Agullo, JO Westholm, EC Lai Genome research 23 (5), 812-825, 2013	379	2013
Deep annotation of Drosophila melanogaster microRNAs yields insights into their processing, modification, and emergence E Berezikov, N Robine, A Samsonova, JO Westholm, A Naqvi, JH Hung, ... Genome research 21 (2), 203-215, 2011	274	2011
Global patterns of tissue-specific alternative polyadenylation in Drosophila P Smibert, P Miura, JO Westholm, S Shenker, G May, MO Duff, D Zhang, ... Cell reports 1 (3), 277-289, 2012	272	2012
Discovery of hundreds of mirtrons in mouse and human small RNA data E Ladewig, K Okamura, AS Flynt, JO Westholm, EC Lai Genome research 22 (9), 1634-1645, 2012	259	2012
Endocan is a VEGF-A and PI3K regulated gene with increased expression in human renal cancer E Rennel, S Mellberg, A Dimberg, L Petersson, J Botling, A Ameur, ... Experimental cell research 313 (7), 1285-1294, 2007	170	2007
Heterogeneity and interplay of the extracellular vesicle small RNA transcriptome and proteome H Sork, G Corso, K Krjutskov, HJ Johansson, JZ Nordin, OPB Wiklander, ... Scientific reports 8 (1), 10813, 2018	152	2018
Transcriptional profiling reveals a critical role for tyrosine phosphatase VE‐PTP in regulation of VEGFR2 activity and endothelial cell morphogenesis S Mellberg, A Dimberg, F Bahram, M Hayashi, E Rennel, A Ameur, ... The FASEB Journal 23 (5), 1490-1502, 2009	132	2009
Acute sleep loss results in tissue-specific alterations in genome-wide DNA methylation state and metabolic fuel utilization in humans J Cedernaes, M Schönke, JO Westholm, J Mi, A Chibalin, S Voisin, ... Science advances 4 (8), eaar8590, 2018	130	2018
Combinatorial control of gene expression by the three yeast repressors Mig1, Mig2 and Mig3 JO Westholm, N Nordberg, E Murén, A Ameur, J Komorowski, H Ronne BMC genomics 9, 1-15, 2008	122	2008
Computational and experimental identification of mirtrons in Drosophila melanogaster and Caenorhabditis elegans WJ Chung, P Agius, JO Westholm, M Chen, K Okamura, N Robine, ... Genome Research 21 (2), 286-300, 2011	97	2011
The BEN domain is a novel sequence-specific DNA-binding domain conserved in neural transcriptional repressors Q Dai, A Ren, JO Westholm, AA Serganov, DJ Patel, EC Lai Genes & development 27 (6), 602-614, 2013	93	2013
Common and distinct patterns of terminal modifications to mirtrons and canonical microRNAs JO Westholm, E Ladewig, K Okamura, N Robine, EC Lai Rna 18 (2), 177-192, 2012	91	2012
Clonal relations in the mouse brain revealed by single-cell and spatial transcriptomics M Ratz, L von Berlin, L Larsson, M Martin, JO Westholm, G La Manno, ... Nature neuroscience 25 (3), 285-294, 2022	84	2022
Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines J Wen, J Mohammed, D Bortolamiol-Becet, H Tsai, N Robine, ... Genome research 24 (7), 1236-1250, 2014	70	2014
Neurophysiological Defects and Neuronal Gene Deregulation in Drosophila mir-124 Mutants K Sun, JO Westholm, K Tsurudome, JW Hagen, Y Lu, M Kohwi, D Betel, ... PLoS genetics 8 (2), e1002515, 2012	67	2012
Histone modifications influence mediator interactions with chromatin X Zhu, Y Zhang, G Bjornsdottir, Z Liu, A Quan, M Costanzo, ... Nucleic acids research 39 (19), 8342-8354, 2011	63	2011

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