| Conformational and physicochemical DNA features specific for transcription factor binding sites. JV Ponomarenko, MP Ponomarenko, AS Frolov, DG Vorobyev, ... Bioinformatics (Oxford, England) 15 (7), 654-668, 1999 | 112 | 1999 |
| An experimental verification of the predicted effects of promoter TATA-box polymorphisms associated with human diseases on interactions between the TATA boxes and TATA-binding … L Savinkova, I Drachkova, T Arshinova, P Ponomarenko, M Ponomarenko, ... PloS one 8 (2), e54626, 2013 | 86 | 2013 |
| Identification of sequence-dependent DNA features correlating to activity of DNA sites interacting with proteins. MP Ponomarenko, JV Ponomarenko, AS Frolov, NL Podkolodny, ... Bioinformatics (Oxford, England) 15 (7), 687-703, 1999 | 77 | 1999 |
| TATA box polymorphisms in human gene promoters and associated hereditary pathologies LK Savinkova, MP Ponomarenko, PM Ponomarenko, IA Drachkova, ... Biochemistry (Moscow) 74, 117-129, 2009 | 76 | 2009 |
| rSNP_Guide: An integrated database‐tools system for studying SNPs and site‐directed mutations in transcription factor binding sites JV Ponomarenko, GV Orlova, TI Merkulova, EV Gorshkova, ON Fokin, ... Human mutation 20 (4), 239-248, 2002 | 69 | 2002 |
| A step-by-step model of TBP/TATA box binding allows predicting human hereditary diseases by single nucleotide polymorphism PM Ponomarenko, LK Savinkova, IA Drachkova, MV Lysova, ... Doklady Biochemistry and Biophysics 419 (1), 88-92, 2008 | 56 | 2008 |
| Point mutations within 663–666 bp of intron 6 of the human TDO2 gene, associated with a number of psychiatric disorders, damage the YY-1 transcription factor binding site GV Vasiliev, VM Merkulov, VF Kobzev, TI Merkulova, MP Ponomarenko, ... FEBS letters 462 (1-2), 85-88, 1999 | 56 | 1999 |
| The Mechanism by which TATA‐Box Polymorphisms Associated with Human Hereditary Diseases Influence Interactions with the TATA‐Binding Protein I Drachkova, L Savinkova, T Arshinova, M Ponomarenko, S Peltek, ... Human Mutation 35 (5), 601-608, 2014 | 53 | 2014 |
| Oligonucleotide frequency matrices addressed to recognizing functional DNA sites. MP Ponomarenko, JV Ponomarenko, AS Frolov, OA Podkolodnaya, ... Bioinformatics (Oxford, England) 15 (7), 631-643, 1999 | 53 | 1999 |
| How to Use SNP_TATA_Comparator to Find a Significant Change in Gene Expression Caused by the Regulatory SNP of This Gene’s Promoter via a Change in Affinity of the TATA‐Binding … M Ponomarenko, D Rasskazov, O Arkova, P Ponomarenko, V Suslov, ... BioMed Research International 2015 (1), 359835, 2015 | 49 | 2015 |
| rSNP_Guide, a database system for analysis of transcription factor binding to target sequences: application to SNPs and site-directed mutations JV Ponomarenko, TI Merkulova, GV Vasiliev, ZB Levashova, GV Orlova, ... Nucleic Acids Research 29 (1), 312-316, 2001 | 48 | 2001 |
| SITEVIDEO: a computer system for functional site analysis and recognition. Investigation of the human splice sites AE Kel, MP Ponomarenko, EA Likhachev, YL Orlov, IV Ischenko, ... Bioinformatics 9 (6), 617-627, 1993 | 43 | 1993 |
| ASPD (Artificially Selected Proteins/Peptides Database): a database of proteins and peptides evolved in vitro VP Valuev, DA Afonnikov, MP Ponomarenko, L Milanesi, NA Kolchanov Nucleic acids research 30 (1), 200-202, 2002 | 40 | 2002 |
| GenViewer: a computing tool for protein-coding regions prediction in nucleotide sequences L Milanesi, NA Kolchanov, IB Rogozin, IV Ischenko, AE Kel, YL Orlov, ... Bioinformatics, Supercomputing and Complex Genome Analysis, 573-587, 1993 | 38 | 1993 |
| Heat shock proteins M Ponomarenko, I Stepanenko, N Kolchanov Brenner’s encyclopedia of genetics 3, 402-405, 2013 | 37 | 2013 |
| ACTIVITY: a database on DNA/RNA sites activity adapted to apply sequence-activity relationships from one system to another JV Ponomarenko, DP Furman, AS Frolov, NL Podkolodny, GV Orlova, ... Nucleic Acids Research 29 (1), 284-287, 2001 | 37 | 2001 |
| Nucleosomal DNA property database. VG Levitsky, MP Ponomarenko, JV Ponomarenko, AS Frolov, ... Bioinformatics (Oxford, England) 15 (7), 582-592, 1999 | 37 | 1999 |
| SELEX_DB: a database on in vitro selected oligomers adapted for recognizing natural sites and for analyzing both SNPs and site-directed mutagenesis data JV Ponomarenko, GV Orlova, AS Frolov, MS Gelfand, MP Ponomarenko Nucleic Acids Research 30 (1), 195-199, 2002 | 36 | 2002 |
| Hogness box M Ponomarenko, V Mironova, K Gunbin, L Savinkova Brenner’s Encyclopedia of Genetics 3, 491-494, 2013 | 35 | 2013 |
| Generating programs for predicting the activity of functional sites MP Ponomarenko, AN Kolchanova, NA Kolchanov Journal of Computational Biology 4 (1), 83-90, 1997 | 35 | 1997 |
