| The DNA-encoded nucleosome organization of a eukaryotic genome N Kaplan, IK Moore, Y Fondufe-Mittendorf, AJ Gossett, D Tillo, Y Field, ... Nature 458 (7236), 362-366, 2009 | 1464 | 2009 |
| A high-resolution atlas of nucleosome occupancy in yeast W Lee, D Tillo, N Bray, RH Morse, RW Davis, TR Hughes, C Nislow Nature genetics 39 (10), 1235-1244, 2007 | 1067 | 2007 |
| A library of yeast transcription factor motifs reveals a widespread function for Rsc3 in targeting nucleosome exclusion at promoters G Badis, ET Chan, H van Bakel, L Pena-Castillo, D Tillo, K Tsui, ... Molecular cell 32 (6), 878-887, 2008 | 538 | 2008 |
| G+ C content dominates intrinsic nucleosome occupancy D Tillo, TR Hughes BMC bioinformatics 10, 1-13, 2009 | 321 | 2009 |
| High nucleosome occupancy is encoded at human regulatory sequences D Tillo, N Kaplan, IK Moore, Y Fondufe-Mittendorf, AJ Gossett, Y Field, ... PloS one 5 (2), e9129, 2010 | 211 | 2010 |
| Nucleosome sequence preferences influence in vivo nucleosome organization N Kaplan, I Moore, Y Fondufe-Mittendorf, AJ Gossett, D Tillo, Y Field, ... Nature structural & molecular biology 17 (8), 918-920, 2010 | 146 | 2010 |
| Nucleosome maps of the human cytomegalovirus genome reveal a temporal switch in chromatin organization linked to a major IE protein E Zalckvar, C Paulus, D Tillo, A Asbach-Nitzsche, Y Lubling, C Winterling, ... Proceedings of the National Academy of Sciences 110 (32), 13126-13131, 2013 | 61 | 2013 |
| CTCF is a barrier for 2C-like reprogramming T Olbrich, M Vega-Sendino, D Tillo, W Wu, N Zolnerowich, R Pavani, ... Nature Communications 12 (1), 4856, 2021 | 50 | 2021 |
| Custom DNA microarrays reveal diverse binding preferences of proteins and small molecules to thousands of G-quadruplexes S Ray, D Tillo, RE Boer, N Assad, M Barshai, G Wu, Y Orenstein, D Yang, ... ACS chemical biology 15 (4), 925-935, 2020 | 50 | 2020 |
| Spatial meta-transcriptomics reveal associations of intratumor bacteria burden with lung cancer cells showing a distinct oncogenic signature A Wong-Rolle, Q Dong, Y Zhu, P Divakar, JL Hor, N Kedei, M Wong, ... Journal for ImmunoTherapy of Cancer 10 (7), 2022 | 48 | 2022 |
| Codep: maximizing co‐evolutionary interdependencies to discover interacting proteins ERM Tillier, L Biro, G Li, D Tillo Proteins: Structure, Function, and Bioinformatics 63 (4), 822-831, 2006 | 42 | 2006 |
| ASXL1 and STAG2 are common mutations in GATA2 deficiency patients with bone marrow disease and myelodysplastic syndrome RR West, KR Calvo, LJ Embree, W Wang, LM Tuschong, TR Bauer Jr, ... Blood advances 6 (3), 793-807, 2022 | 41 | 2022 |
| Methylated cytosines mutate to transcription factor binding sites that drive tetrapod evolution X He, D Tillo, J Vierstra, KS Syed, C Deng, GJ Ray, ... Genome biology and evolution 7 (11), 3155-3169, 2015 | 22 | 2015 |
| Custom G4 microarrays reveal selective G-quadruplex recognition of small molecule BMVC: a large-scale assessment of ligand binding selectivity G Wu, D Tillo, S Ray, TC Chang, JS Schneekloth Jr, C Vinson, D Yang Molecules 25 (15), 3465, 2020 | 20 | 2020 |
| The Epstein-Barr virus B-ZIP protein Zta recognizes specific DNA sequences containing 5-methylcytosine and 5-hydroxymethylcytosine D Tillo, S Ray, KS Syed, MR Gaylor, X He, J Wang, N Assad, SR Durell, ... Biochemistry 56 (47), 6200-6210, 2017 | 20 | 2017 |
| 5-Methylcytosine (5mC) and 5-hydroxymethylcytosine (5hmC) enhance the DNA binding of CREB1 to the C/EBP half-site tetranucleotide GCAA KS Syed, X He, D Tillo, J Wang, SR Durell, C Vinson Biochemistry 55 (49), 6940-6948, 2016 | 19 | 2016 |
| The homeobox transcription factor DUXBL controls exit from totipotency M Vega-Sendino, FF Lüttmann, T Olbrich, Y Chen, C Kuenne, P Stein, ... Nature genetics 56 (4), 697-709, 2024 | 16 | 2024 |
| A knock-in mouse model of thymoma with the GTF2I L424H mutation Y He, IK Kim, J Bian, A Polyzos, DC Di Giammartino, YW Zhang, J Luo, ... Journal of Thoracic Oncology 17 (12), 1375-1386, 2022 | 16 | 2022 |
| Inheritance of cytosine methylation D Tillo, S Mukherjee, C Vinson Journal of Cellular Physiology 231 (11), 2346-2352, 2016 | 15 | 2016 |
| The ETS transcription factor ERF controls the exit from the naïve pluripotent state in a MAPK-dependent manner M Vega-Sendino, T Olbrich, D Tillo, AD Tran, CN Domingo, M Franco, ... Science Advances 7 (40), eabg8306, 2021 | 10 | 2021 |
