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Andreas Wilm
Andreas Wilm
ImmunoScape
E-mailová adresa ověřena na: immunoscape.com - Domovská stránka
Název
Citace
Citace
Rok
Clustal W and Clustal X version 2.0
MA Larkin, G Blackshields, NP Brown, R Chenna, PA McGettigan, ...
bioinformatics 23 (21), 2947-2948, 2007
332332007
Fast, scalable generation of high‐quality protein multiple sequence alignments using Clustal Omega
F Sievers, A Wilm, D Dineen, TJ Gibson, K Karplus, W Li, R Lopez, ...
Molecular systems biology 7 (1), 539, 2011
166502011
The nf-core framework for community-curated bioinformatics pipelines
PA Ewels, A Peltzer, S Fillinger, H Patel, J Alneberg, A Wilm, MU Garcia, ...
Nature biotechnology 38 (3), 276-278, 2020
19992020
LoFreq: a sequence-quality aware, ultra-sensitive variant caller for uncovering cell-population heterogeneity from high-throughput sequencing datasets
A Wilm, PPK Aw, D Bertrand, GHT Yeo, SH Ong, CH Wong, CC Khor, ...
Nucleic Acids Research, 2012
13122012
Sustainable data analysis with Snakemake
F Mölder, KP Jablonski, B Letcher, MB Hall, CH Tomkins-Tinch, V Sochat, ...
F1000Research 10, 2021
12822021
Fast and sensitive mapping of nanopore sequencing reads with GraphMap
I Sović, M Šikić, A Wilm, SN Fenlon, S Chen, N Nagarajan
Nature communications 7 (1), 11307, 2016
4202016
Whole metagenome profiling reveals skin microbiome-dependent susceptibility to atopic dermatitis flare
KR Chng, ASL Tay, C Li, AHQ Ng, J Wang, BK Suri, SA Matta, ...
Nature microbiology 1 (9), 1-10, 2016
3862016
Genomic landscape of lung adenocarcinoma in East Asians
J Chen, H Yang, ASM Teo, LB Amer, FG Sherbaf, CQ Tan, JJS Alvarez, ...
Nature genetics 52 (2), 177-186, 2020
3852020
A benchmark of multiple sequence alignment programs upon structural RNAs
PP Gardner, A Wilm, S Washietl
Nucleic acids research 33 (8), 2433-2439, 2005
3692005
In vivo mapping of eukaryotic RNA interactomes reveals principles of higher-order organization and regulation
JGA Aw, Y Shen, A Wilm, M Sun, XN Lim, KL Boon, S Tapsin, YS Chan, ...
Molecular cell 62 (4), 603-617, 2016
3442016
Combining tumor genome simulation with crowdsourcing to benchmark somatic single-nucleotide-variant detection
AD Ewing, KE Houlahan, Y Hu, K Ellrott, C Caloian, TN Yamaguchi, ...
Nature methods 12 (7), 623-630, 2015
3412015
A randomized, double-blind placebo controlled trial of balapiravir, a polymerase inhibitor, in adult dengue patients
NM Nguyen, CNB Tran, LK Phung, KTH Duong, H le Anh Huynh, J Farrar, ...
Journal of Infectious Diseases, 2012
2902012
Genomic characterization of three unique Dehalococcoides that respire on persistent polychlorinated biphenyls
S Wang, KR Chng, A Wilm, S Zhao, KL Yang, N Nagarajan, J He
Proceedings of the National Academy of Sciences 111 (33), 12103-12108, 2014
2122014
Reproducible, scalable, and shareable analysis pipelines with bioinformatics workflow managers
L Wratten, A Wilm, J Göke
Nature methods 18 (10), 1161-1168, 2021
2032021
An enhanced RNA alignment benchmark for sequence alignment programs
A Wilm, I Mainz, G Steger
Algorithms for molecular biology 1, 1-11, 2006
1882006
Large-scale whole-genome sequencing of three diverse Asian populations in Singapore
D Wu, J Dou, X Chai, C Bellis, A Wilm, CC Shih, WWJ Soon, N Bertin, ...
Cell 179 (3), 736-749. e15, 2019
1782019
INC-Seq: accurate single molecule reads using nanopore sequencing
C Li, KR Chng, EJH Boey, AHQ Ng, A Wilm, N Nagarajan
Gigascience 5 (1), s13742-016-0140-7, 2016
1702016
Sequence embedding for fast construction of guide trees for multiple sequence alignment
G Blackshields, F Sievers, W Shi, A Wilm, DG Higgins
Algorithms for Molecular Biology 5, 1-11, 2010
1682010
R-Coffee: a method for multiple alignment of non-coding RNA
A Wilm, DG Higgins, C Notredame
Nucleic acids research 36 (9), e52-e52, 2008
1442008
Structure mapping of dengue and Zika viruses reveals functional long-range interactions
RG Huber, XN Lim, WC Ng, AYL Sim, HX Poh, Y Shen, SY Lim, ...
Nature communications 10 (1), 1408, 2019
1282019
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Články 1–20