Thomas Nordahl Petersen

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Søren BrunakProfessor of Disease Systems Biology, University of CopenhagenE-mailová adresa ověřena na: cpr.ku.dk
Frank AarestrupTechnical University of Denmark, DTUE-mailová adresa ověřena na: food.dtu.dk
Gunnar von HeijneStockholm UniversityE-mailová adresa ověřena na: dbb.su.se
Ole LundTechnical University of DenmarkE-mailová adresa ověřena na: dtu.dk
Henrik NielsenAssociate Professor, Department of Health Technology, Technical University of DenmarkE-mailová adresa ověřena na: dtu.dk
Morten NielsenDepartment of Health Technology, The Technical University ofE-mailová adresa ověřena na: cbs.dtu.dk
Claus LundegaardDirector, ZS Associates, DiscoveryE-mailová adresa ověřena na: zs.com
Nikolaj Sorgenfrei BlomSenior Researcher, DTUE-mailová adresa ověřena na: dtu.dk
Thomas Sicheritz-PontenProfessor in Computational Phage Biodiscovery, University of CopenhagenE-mailová adresa ověřena na: sund.ku.dk
Simon RasmussenProfessor, University of CopenhagenE-mailová adresa ověřena na: sund.ku.dk
Bent PetersenSenior Researcher, PhD, Globe institute, University of CopenhagenE-mailová adresa ověřena na: sund.ku.dk
Henrik Georg BohrAssociate Professor of Molecular Biophysics, Technical University of Denmark, Quantum Protein CenterE-mailová adresa ověřena na: fysik.dtu.dk
Jakob BohrProfessor, DTU Nanotech, Technical University of DenmarkE-mailová adresa ověřena na: nanotech.dtu.dk
Henrik M. Geertz-Hansen21st.BIOE-mailová adresa ověřena na: 21st.bio
Martin C F ThomsenPhD studentE-mailová adresa ověřena na: cbs.dtu.dk
Michael GajhedeProfessor i proteinkrystallografi, Københavns UniversitetE-mailová adresa ověřena na: sund.ku.dk
Adam FeistUC San Diego (UCSD) / Technical University of Denmark (DTU)E-mailová adresa ověřena na: ucsd.edu
Katrine SchjoldagerCopenhagen Center for Glycomics, University of CopenhagenE-mailová adresa ověřena na: sund.ku.dk
Ramneek GuptaNovo Nordisk Research Centre OxfordE-mailová adresa ověřena na: novonordisk.com
Jose M G IzarzugazaNovo Nordisk, Bioinformatics and Data Mining DepartmentE-mailová adresa ověřena na: novonordisk.com

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Thomas Nordahl Petersen

DTU Food, National Food Institute, Denmark

E-mailová adresa ověřena na: food.dtu.dk

Metagenomics neural networks anti-microbial resistance


Název Seřadit podle citací Seřadit podle roku Seřadit podle názvu	Citace Citace	Rok
SignalP 4.0: discriminating signal peptides from transmembrane regions TN Petersen, S Brunak, G Von Heijne, H Nielsen Nature methods 8 (10), 785-786, 2011	10273	2011
SignalP 5.0 improves signal peptide predictions using deep neural networks JJ Almagro Armenteros, KD Tsirigos, CK Sønderby, TN Petersen, ... Nature biotechnology 37 (4), 420-423, 2019	2900	2019
SignalP 5.0 improves signal peptide predictions using deep neural networks JJA Armenteros, KD Tsirigos, CK Sønderby, TN Petersen, O Winther, ... Nature biotechnology 37, 420-423, 2019	2746	2019
Global monitoring of antimicrobial resistance based on metagenomics analyses of urban sewage RS Hendriksen, P Munk, P Njage, B Van Bunnik, L McNally, ... Nature communications 10 (1), 1124, 2019	848	2019
A generic method for assignment of reliability scores applied to solvent accessibility predictions B Petersen, TN Petersen, P Andersen, M Nielsen, C Lundegaard BMC structural biology 9, 1-10, 2009	745	2009
Detection of mobile genetic elements associated with antibiotic resistance in Salmonella enterica using a newly developed web tool: MobileElementFinder MHK Johansson, V Bortolaia, S Tansirichaiya, FM Aarestrup, AP Roberts, ... Journal of Antimicrobial Chemotherapy 76 (1), 101-109, 2021	451	2021
CPHmodels-3.0—remote homology modeling using structure-guided sequence profiles M Nielsen, C Lundegaard, O Lund, TN Petersen Nucleic acids research 38 (suppl_2), W576-W581, 2010	445	2010
Improved metagenome binning and assembly using deep variational autoencoders JN Nissen, J Johansen, RL Allesøe, CK Sønderby, JJA Armenteros, ... Nature biotechnology 39 (5), 555-560, 2021	392	2021
Abundance and diversity of the faecal resistome in slaughter pigs and broilers in nine European countries P Munk, BE Knudsen, O Lukjancenko, ASR Duarte, L Van Gompel, ... Nature microbiology 3 (8), 898-908, 2018	312	2018
Prediction of protein secondary structure at 80% accuracy TN Petersen, C Lundegaard, M Nielsen, H Bohr, J Bohr, S Brunak, ... Proteins: Structure, Function, and Bioinformatics 41 (1), 17-20, 2000	212	2000
The crystal structure of rhamnogalacturonase A from Aspergillus aculeatus: a right-handed parallel β helix TN Petersen, S Kauppinen, S Larsen Structure 5 (4), 533-544, 1997	183	1997
Genomic analysis of sewage from 101 countries reveals global landscape of antimicrobial resistance P Munk, C Brinch, FD Møller, TN Petersen, RS Hendriksen, AM Seyfarth, ... Nature Communications 13 (1), 7251, 2022	169	2022
A systematic study of site-specific GalNAc-type O-glycosylation modulating proprotein convertase processing KTBG Schjoldager, MB Vester-Christensen, CK Goth, TN Petersen, ... Journal of Biological Chemistry 286 (46), 40122-40132, 2011	116	2011
NetTurnP–neural network prediction of beta-turns by use of evolutionary information and predicted protein sequence features B Petersen, C Lundegaard, TN Petersen PloS one 5 (11), e15079, 2010	116	2010
Meta-genomic analysis of toilet waste from long distance flights; a step towards global surveillance of infectious diseases and antimicrobial resistance T Nordahl Petersen, S Rasmussen, H Hasman, C Carøe, J Bælum, ... Scientific reports 5 (1), 11444, 2015	98	2015
Norgal: extraction and de novo assembly of mitochondrial DNA from whole-genome sequencing data K Al-Nakeeb, TN Petersen, T Sicheritz-Pontén BMC bioinformatics 18, 1-7, 2017	85	2017
MGmapper: reference based mapping and taxonomy annotation of metagenomics sequence reads TN Petersen, O Lukjancenko, MCF Thomsen, M Maddalena Sperotto, ... PloS one 12 (5), e0176469, 2017	84	2017
Pancreatic spasmolytic polypeptide: first three-dimensional structure of a member of the mammalian trefoil family of peptides M Gajhede, TN Petersen, A Henriksen, JFW Petersen, Z Dauter, ... Structure 1 (4), 253-262, 1993	82	1993
Midbrain expression of Delta-like 1 homologue is regulated by GDNF and is associated with dopaminergic differentiation NS Christophersen, M Grønborg, TN Petersen, L Fjord-Larsen, ... Experimental neurology 204 (2), 791-801, 2007	74	2007
Cofactory: Sequence‐based prediction of cofactor specificity of Rossmann folds HM Geertz‐Hansen, N Blom, AM Feist, S Brunak, TN Petersen Proteins: Structure, Function, and Bioinformatics 82 (9), 1819-1828, 2014	61	2014

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