| CARD 2020: antibiotic resistome surveillance with the comprehensive antibiotic resistance database BP Alcock, AR Raphenya, TTY Lau, KK Tsang, M Bouchard, ... Nucleic acids research 48 (D1), D517-D525, 2020 | 2982 | 2020 |
| CARD 2017: expansion and model-centric curation of the comprehensive antibiotic resistance database B Jia, AR Raphenya, B Alcock, N Waglechner, P Guo, KK Tsang, BA Lago, ... Nucleic acids research, gkw1004, 2016 | 2384 | 2016 |
| CARD 2023: expanded curation, support for machine learning, and resistome prediction at the Comprehensive Antibiotic Resistance Database BP Alcock, W Huynh, R Chalil, KW Smith, AR Raphenya, MA Wlodarski, ... Nucleic acids research 51 (D1), D690-D699, 2023 | 790 | 2023 |
| A comparison of whole genome sequencing of SARS-CoV-2 using amplicon-based sequencing, random hexamers, and bait capture JA Nasir, RA Kozak, P Aftanas, AR Raphenya, KM Smith, F Maguire, ... Viruses 12 (8), 895, 2020 | 102 | 2020 |
| Capturing the resistome: a targeted capture method to reveal antibiotic resistance determinants in metagenomes AK Guitor, AR Raphenya, J Klunk, M Kuch, B Alcock, MG Surette, ... Antimicrobial agents and chemotherapy 64 (1), 10.1128/aac. 01324-19, 2019 | 90 | 2019 |
| Future-proofing and maximizing the utility of metadata: The PHA4GE SARS-CoV-2 contextual data specification package EJ Griffiths, RE Timme, CI Mendes, AJ Page, NF Alikhan, D Fornika, ... GigaScience 11, giac003, 2022 | 29 | 2022 |
| The origins and genomic diversity of American Civil War Era smallpox vaccine strains AT Duggan, J Klunk, AF Porter, AN Dhody, R Hicks, GL Smith, ... Genome biology 21, 1-11, 2020 | 29 | 2020 |
| Dynamic expression profiles of virus-responsive and putative antimicrobial peptide-encoding transcripts during Atlantic cod (Gadus morhua) embryonic and early larval development ML Rise, JR Hall, BP Alcock, TS Hori Gene 509 (2), 232-246, 2012 | 18 | 2012 |
| Exploring the mobilome and resistome of Enterococcus faecium in a One Health context across two continents H Sanderson, KL Gray, A Manuele, F Maguire, A Khan, C Liu, ... Microbial genomics 8 (9), 000880, 2022 | 15 | 2022 |
| The PHA4GE SARS-CoV-2 contextual data specification for open genomic epidemiology EJ Griffiths, RE Timme, AJ Page, N Alikhan, D Fornika, F Maguire, ... | 15 | 2020 |
| Evolution and nomenclature of the trimethoprim resistant dihydrofolate (dfr) reductases M Faltyn, B Alcock, A McArthur Preprints, 2019 | 10 | 2019 |
| hAMRonization: Enhancing antimicrobial resistance prediction using the PHA4GE AMR detection specification and tooling I Mendes, E Griffiths, A Manuele, D Fornika, SH Tausch, T Le-Viet, ... bioRxiv, 2024.03. 07.583950, 2024 | 6 | 2024 |
| A standardized nomenclature for resistance-modifying agents in the Comprehensive Antibiotic Resistance Database KW Smith, BP Alcock, S French, MA Farha, AR Raphenya, ED Brown, ... Microbiology Spectrum 11 (6), e02744-23, 2023 | 5 | 2023 |
| Simultaneous detection of pathogens and antimicrobial resistance genes with the open source, cloud-based, CZ ID pipeline D Lu, KL Kalantar, VT Chu, AL Glascock, ES Guerrero, N Bernick, ... bioRxiv, 2024 | 4 | 2024 |
| Simultaneous detection of pathogens and antimicrobial resistance genes with the open source, cloud-based, CZ ID pipeline C Langelier, D Lu, K Kalantar, V Chu, A Glascock, E Guerrero, N Bernick, ... Research Square, 2024 | 1 | 2024 |
| SARS-CoV-2 Illumina GeNome Assembly Line (SIGNAL), a Snakemate workflow for rapid and bulk analysis of Illumina sequencing of SARS-CoV-2 genomes JA Nasir, F Maguire, KM Smith, EM Panousis, SJC Baker, P Aftanas, ... NAR Genomics and Bioinformatics 6 (4), lqae176, 2024 | | 2024 |
| CARPDM: cost-effective antibiotic resistome profiling of metagenomic samples using targeted enrichment D Hackenberger, H Imtiaz, AR Raphenya, BP Alcock, HN Poinar, ... bioRxiv, 2024.03. 27.587061, 2024 | | 2024 |
| Additional file 12 of The origins and genomic diversity of American Civil War Era smallpox vaccine strains B Alcock, A Burke, WB Davidson, AN Dhody, AT Duggan, L Flanders, ... | | 2020 |
| Duplicate Gene Evolution in a Tetraploid African Clawed Frog (Silurana) B Alcock | | 2015 |
| Functional Genomics Study of Defense-relevant Transcript Expression During Embryogenesis and Early Larval Development in the Atlantic Cod (Gadus Morhua) BP Alcock Memorial University of Newfoundland, 2011 | | 2011 |