| Plasticity within the barrel domain of BamA mediates a hybrid-barrel mechanism by BAM R Wu, JW Bakelar, K Lundquist, Z Zhang, KM Kuo, D Ryoo, YT Pang, ... Nature Communications 12 (1), 7131, 2021 | 48 | 2021 |
| Detection and quantification of hydrogen peroxide in aqueous solutions using chemical exchange saturation transfer D Ryoo, X Xu, Y Li, JA Tang, J Zhang, PCM Van Zijl, G Liu Analytical chemistry 89 (14), 7758-7764, 2017 | 33 | 2017 |
| Adaptation of the periplasm to maintain spatial constraints essential for cell envelope processes and cell viability E Mandela, CJ Stubenrauch, D Ryoo, H Hwang, EJ Cohen, VL Torres, ... Elife 11, e73516, 2022 | 26 | 2022 |
| BamA is required for autotransporter secretion D Ryoo, MO Rydmark, YT Pang, KP Lundquist, D Linke, JC Gumbart Biochimica et Biophysica Acta (BBA)-General Subjects 1864 (7), 129581, 2020 | 15 | 2020 |
| Modeling intermediates of BamA folding an outer membrane protein KM Kuo, D Ryoo, K Lundquist, JC Gumbart Biophysical Journal 121 (17), 3242-3252, 2022 | 8 | 2022 |
| The Role of Extracellular Loops in the Folding of Outer Membrane Protein X (OmpX) of Escherichia coli S Hermansen, D Ryoo, M Orwick-Rydmark, A Saragliadis, JC Gumbart, ... Frontiers in Molecular Biosciences 9, 918480, 2022 | 7 | 2022 |
| Inward-facing glycine residues create sharp turns in β-barrel membrane proteins Z Zhang, D Ryoo, C Balusek, A Acharya, MO Rydmark, D Linke, ... Biochimica et Biophysica Acta (BBA)-Biomembranes 1863 (10), 183662, 2021 | 6 | 2021 |
| Plasticity within the barrel domain of BamA mediates a hybrid-barrel mechanism by BAM. Nat Commun 12: 7131 R Wu, JW Bakelar, K Lundquist, Z Zhang, KM Kuo, D Ryoo, YT Pang, ... | 5 | 2021 |
| The periplasmic space cannot be artificially enlarged due to homeostatic regulation maintaining spatial constraints essential for membrane spanning processes and cell viability E Mandela, CJ Stubenrauch, D Ryoo, H Hwang, EJ Cohen, VL Torres, ... bioRxiv, 2021 | 2 | 2021 |
| Thicket and Mesh: How the Outer Membrane Can Resist Tension Imposed by the Cell Wall D Ryoo, H Hwang, JC Gumbart The Journal of Physical Chemistry B, 2024 | 1 | 2024 |
| Extraction of Dielectric Permittivity from Atomistic Molecular Dynamics Simulations and Microwave Measurements A Saad-Falcon, Z Zhang, D Ryoo, J Dee, RS Westafer, JC Gumbart The Journal of Physical Chemistry B 126 (40), 8021-8029, 2022 | 1 | 2022 |
| Periplasm homeostatic regulation maintains spatial constraints essential for cell envelope processes and cell viability E Mandela, CJ Stubenrauch, D Ryoo, H Hwang, EJ Cohen, VL Torres, ... bioRxiv, 2021.01. 13.426498, 2021 | 1 | 2021 |
| Label Free CEST MRI Detection of Hydrogen Peroxide and its Applications in Monitoring Oxygen Delivery for Tissue Engineering D Ryoo Johns Hopkins University, 2017 | 1 | 2017 |
| Thicket and mesh: Understanding turgor pressure resistance of outer membrane-cell wall system D Ryoo, H Hwang, JC Gumbart Biophysical Journal 122 (3), 362a, 2023 | | 2023 |
| Inward-facing glycine residues create sharp turns in β-barrel membrane proteins Z Zhang, D Ryoo, JC Gumbart Biophysical Journal 122 (3), 55a, 2023 | | 2023 |
| Thread-by-thread: modelling the intermediate steps of OMP insertion by BamA KM Kuo, D Ryoo, K Lundquist, JC Gumbart Biophysical Journal 121 (3), 465a-466a, 2022 | | 2022 |
| BamB Stabilizes BamA's Laterally Open and Closed States D Ryoo, KM Kuo, Z Zhang, YT Pang, JC Gumbart Biophysical Journal 120 (3), 91a, 2021 | | 2021 |
| Quantitative Comparisons of Competing Models of Autotransporter Passenger-Domain Secretion D Ryoo, MO Rydmark, YT Pang, K Lundquist, D Linke, JC Gumbart Biophysical Journal 118 (3), 364a-365a, 2020 | | 2020 |
| Lateral Gate Opening of BAM Complex Studied by Free Energy Calculations and the String Method YT Pang, D Ryoo, Z Zhang, K Lundquist, JC Gumbart Biophysical Journal 118 (3), 363a, 2020 | | 2020 |
| The Open State of the Bam Complex is Stabilized by its Accessory Proteins Z Zhang, D Ryoo, K Lundquist, J Gumbart Biophysical Journal 116 (3), 204a, 2019 | | 2019 |