Ben Langmead

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Steven SalzbergBloomberg Distinguished Professor, Johns Hopkins UniversityVerificeret mail på jhu.edu
Jeff LeekChief Data Officer, VP, and J Orin Edson Foundation Professor, Fred Hutchinson Cancer CenterVerificeret mail på fredhutch.org
Kasper D. HansenDepartment of Biostatistics, Johns Hopkins UniversityVerificeret mail på jhsph.edu
Mihai PopProfessor of Computer Science, University of Maryland, College ParkVerificeret mail på umd.edu
Cole TrapnellAssociate Professor, Dept. of Genome Sciences, University of WashingtonVerificeret mail på uw.edu
Andrew E. JaffeVP, Head of Data Sciences, Neumora TherapeuticsVerificeret mail på neumoratx.com
Christopher WilksPhD Student in Computer Science, Johns Hopkins UniversityVerificeret mail på jhu.edu
Rafael A IrizarryProfessor, Biostatistics and Computational Biology, Dana-Farber and HarvardVerificeret mail på ds.dfci.harvard.edu
Daehwan KimOmphalos Lifesciences IncVerificeret mail på omphaloslifesci.com
Michael C. SchatzBloomberg Distinguished Professor, Johns Hopkins UniversityVerificeret mail på cs.jhu.edu
Travis GagieAssociate Professor at Dalhousie UniversityVerificeret mail på dal.ca
Leonardo Collado-TorresInvestigator at LIBD + Asst. Prof., Department of Biostatistics, JHBSPHVerificeret mail på libd.org
Andrew P. FeinbergDirector, Center for Epigenetics; Bloomberg Distinguished Professor, Johns Hopkins UniversityVerificeret mail på jhu.edu
Christina BoucherUniversity of FloridaVerificeret mail på ufl.edu
Derrick WoodBlackjack BiotechnologiesVerificeret mail på cs.jhu.edu
Jennifer Lu, Ph. D.Staff Scientist, Johns Hopkins UniversityVerificeret mail på jhmi.edu
Hector Corrada BravoAssociate Professor of Computer Science, University of MarylandVerificeret mail på umiacs.umd.edu
Sarven SabunciyanJohns Hopkins UniversityVerificeret mail på jhmi.edu
Giovanni ManziniUniversity of PisaVerificeret mail på unipi.it
Nae-Chyun ChenExai BioVerificeret mail på exai.bio

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Ben Langmead

Associate Professor of Computer Science, Johns Hopkins University

Verificeret mail på cs.jhu.edu - Startside

Sequence Alignment Computational Genomics Computer Science


Titel Sortér efter henvisninger Sortér efter årstal Sortér efter titel	Citeret af Citeret af	År
Fast gapped-read alignment with Bowtie 2 B Langmead, SL Salzberg Nature methods 9 (4), 357-359, 2012	52037	2012
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome B Langmead, C Trapnell, M Pop, SL Salzberg Genome biology 10, 1-10, 2009	24404	2009
HISAT: a fast spliced aligner with low memory requirements D Kim, B Langmead, SL Salzberg Nature methods 12 (4), 357-360, 2015	19363	2015
Improved metagenomic analysis with Kraken 2 DE Wood, J Lu, B Langmead Genome biology 20, 1-13, 2019	4778	2019
Tackling the widespread and critical impact of batch effects in high-throughput data JT Leek, RB Scharpf, HC Bravo, D Simcha, B Langmead, WE Johnson, ... Nature Reviews Genetics 11 (10), 733-739, 2010	2251	2010
Aligning short sequencing reads with Bowtie B Langmead Current protocols in bioinformatics 32 (1), 11.7. 1-11.7. 14, 2010	1473	2010
Increased methylation variation in epigenetic domains across cancer types KD Hansen, W Timp, HC Bravo, S Sabunciyan, B Langmead, ... Nature genetics 43 (8), 768-775, 2011	1260	2011
BSmooth: from whole genome bisulfite sequencing reads to differentially methylated regions KD Hansen, B Langmead, RA Irizarry Genome biology 13, 1-10, 2012	819	2012
Ballgown bridges the gap between transcriptome assembly and expression analysis AC Frazee, G Pertea, AE Jaffe, B Langmead, SL Salzberg, JT Leek Nature biotechnology 33 (3), 243-246, 2015	816	2015
Scaling read aligners to hundreds of threads on general-purpose processors B Langmead, C Wilks, V Antonescu, R Charles Bioinformatics 35 (3), 421-432, 2019	720	2019
Searching for SNPs with cloud computing B Langmead, MC Schatz, J Lin, M Pop, SL Salzberg Genome biology 10, 1-10, 2009	667	2009
Cloud-scale RNA-sequencing differential expression analysis with Myrna B Langmead, KD Hansen, JT Leek Genome biology 11, 1-11, 2010	437	2010
Reproducible RNA-seq analysis using recount2 L Collado-Torres, A Nellore, K Kammers, SE Ellis, MA Taub, KD Hansen, ... Nature biotechnology 35 (4), 319-321, 2017	427	2017
Cloud computing and the DNA data race MC Schatz, B Langmead, SL Salzberg Nature biotechnology 28 (7), 691-693, 2010	381	2010
Computational pan-genomics: status, promises and challenges Briefings in bioinformatics 19 (1), 118-135, 2018	369	2018
Reversible switching between epigenetic states in honeybee behavioral subcastes BR Herb, F Wolschin, KD Hansen, MJ Aryee, B Langmead, R Irizarry, ... Nature neuroscience 15 (10), 1371-1373, 2012	368	2012
Cloud computing for genomic data analysis and collaboration B Langmead, A Nellore Nature Reviews Genetics 19 (4), 208-219, 2018	339	2018
Metagenome analysis using the Kraken software suite J Lu, N Rincon, DE Wood, FP Breitwieser, C Pockrandt, B Langmead, ... Nature protocols 17 (12), 2815-2839, 2022	332	2022
Polyester: simulating RNA-seq datasets with differential transcript expression AC Frazee, AE Jaffe, B Langmead, JT Leek Bioinformatics 31 (17), 2778-2784, 2015	323	2015
Lighter: fast and memory-efficient sequencing error correction without counting L Song, L Florea, B Langmead Genome biology 15, 1-13, 2014	298	2014

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