Thomas Sebastian B. Schmidt

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Peer BorkDirector of EMBL HeidelbergVerificeret mail på embl.de
Luis Pedro CoelhoCentre for Microbiome Research, Queensland University of TechnologyVerificeret mail på qut.edu.au
Shinichi SunagawaETH Zurich; Swiss Institute of BioinformaticsVerificeret mail på ethz.ch
Christian von MeringProfessor of Computational Biology, University of Zurich and Swiss Institute of BioinformaticsVerificeret mail på imls.uzh.ch
Oleksandr M. MaistrenkoRoyal Netherlands Institute for Sea Research (NIOZ)Verificeret mail på nioz.nl
Jaime Huerta-CepasGroup Leader at CBGP (UPM-INIA-CSIC), Madrid, SpainVerificeret mail på embl.de
Daniel R. MendeAsst. Professor, Amsterdam University Medical Center, University of AmsterdamVerificeret mail på amsterdamumc.nl
João F. Matias RodriguesUniversity of ZurichVerificeret mail på imls.uzh.ch
Anthony FullamEMBLVerificeret mail på embl.de
Askarbek N OrakovEuropean Molecular Biology Laboratory (EMBL), Bork GroupVerificeret mail på embl.de
Georg ZellerLUMC Leiden & EMBL HeidelbergVerificeret mail på embl.de
Matthew Robert HaywardSenior Scientist at DSM-FirmenichVerificeret mail på dsm.com
Ivica Letunićbiobyte solutions GmbHVerificeret mail på biobyte.de
Sofia Kirke Forslund-StartcevaProfessor of Applied Microbiology, Charité Berlin & Guest Group Leader, MDC BerlinVerificeret mail på mdc-berlin.de
Michael Kuhnresearch staff scientist & research coordinator in the lab of Peer Bork, EMBLVerificeret mail på embl.de
Lucas PaoliSchool of Life Sciences, École Polytechnique Fédérale de Lausanne (EPFL)Verificeret mail på epfl.ch
Alessio MilaneseScientist, DSMVerificeret mail på biol.ethz.ch
Hans-Joachim RuscheweyhBioinformatician, D-BIOL, ETH Zurich, Swiss Institute of BioinformaticsVerificeret mail på ethz.ch
Thea Van RossumSenior Bioinformatician, Koonkie IncVerificeret mail på koonkie.com
Simone S LiResearch Group Leader & NHMRC Early Career Fellow, Monash University, AustraliaVerificeret mail på monash.edu

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Thomas Sebastian B. Schmidt

School of Medicine & APC Microbiome, University College Cork

Verificeret mail på ucc.ie - Startside

Microbial Ecology Computational Biology Bioinformatics


Titel Sortér efter henvisninger Sortér efter årstal Sortér efter titel	Citeret af Citeret af	År
The human gut microbiome: from association to modulation TSB Schmidt, J Raes, P Bork Cell 172 (6), 1198-1215, 2018	814	2018
Extensive transmission of microbes along the gastrointestinal tract TSB Schmidt, MR Hayward, LP Coelho, SS Li, PI Costea, AY Voigt, ... elife 8, e42693, 2019	480	2019
Microbial abundance, activity and population genomic profiling with mOTUs2 A Milanese, DR Mende, L Paoli, G Salazar, HJ Ruscheweyh, M Cuenca, ... Nature communications 10 (1), 1014, 2019	444	2019
Similarity of the dog and human gut microbiomes in gene content and response to diet LP Coelho, JR Kultima, PI Costea, C Fournier, Y Pan, ... Microbiome 6, 1-11, 2018	319	2018
Disentangling the mechanisms shaping the surface ocean microbiota R Logares, IM Deutschmann, PC Junger, CR Giner, AK Krabberød, ... Microbiome 8, 1-17, 2020	224*	2020
A faecal microbiota signature with high specificity for pancreatic cancer E Kartal, TSB Schmidt, E Molina-Montes, S Rodríguez-Perales, J Wirbel, ... Gut 71 (7), 1359-1372, 2022	194	2022
Microbiota-derived hydrogen fuels Salmonella typhimurium invasion of the gut ecosystem L Maier, R Vyas, CD Cordova, H Lindsay, TSB Schmidt, S Brugiroux, ... Cell host & microbe 14 (6), 641-651, 2013	185	2013
Pseudo-transition analysis identifies the key regulators of dynamic metabolic adaptations from steady-state data L Gerosa, BRBH Van Rijsewijk, D Christodoulou, K Kochanowski, ... Cell systems 1 (4), 270-282, 2015	180	2015
Combinatorial, additive and dose-dependent drug–microbiome associations SK Forslund, R Chakaroun, M Zimmermann-Kogadeeva, L Markó, ... Nature 600 (7889), 500-505, 2021	178	2021
GUNC: detection of chimerism and contamination in prokaryotic genomes A Orakov, A Fullam, LP Coelho, S Khedkar, D Szklarczyk, DR Mende, ... Genome biology 22, 1-19, 2021	176	2021
Microbiome and metabolome features of the cardiometabolic disease spectrum S Fromentin, SK Forslund, K Chechi, J Aron-Wisnewsky, R Chakaroun, ... Nature medicine 28 (2), 303-314, 2022	157	2022
Towards the biogeography of prokaryotic genes LP Coelho, R Alves, ÁR Del Río, PN Myers, CP Cantalapiedra, ... Nature 601 (7892), 252-256, 2022	145	2022
MAPseq: highly efficient k-mer search with confidence estimates, for rRNA sequence analysis JF Matias Rodrigues, TSB Schmidt, J Tackmann, C von Mering Bioinformatics 33 (23), 3808-3810, 2017	143	2017
Drivers and determinants of strain dynamics following fecal microbiota transplantation TSB Schmidt, SS Li, OM Maistrenko, W Akanni, LP Coelho, S Dolai, ... Nature Medicine 28, 1902–1912, 2022	132	2022
Ecological consistency of SSU rRNA-based operational taxonomic units at a global scale TSB Schmidt, JF Matias Rodrigues, C von Mering PLoS computational biology 10 (4), e1003594, 2014	130	2014
Limits to robustness and reproducibility in the demarcation of operational taxonomic units TSB Schmidt, JF Matias Rodrigues, C von Mering Environmental microbiology 17 (5), 1689-1706, 2015	128	2015
Metagenomic identification of microbial signatures predicting pancreatic cancer from a multinational study N Nagata, S Nishijima, Y Kojima, Y Hisada, K Imbe, T Miyoshi-Akiyama, ... Gastroenterology 163 (1), 222-238, 2022	126	2022
Disentangling the impact of environmental and phylogenetic constraints on prokaryotic within-species diversity OM Maistrenko, DR Mende, M Luetge, F Hildebrand, TSB Schmidt, SS Li, ... The ISME journal 14 (5), 1247-1259, 2020	111	2020
Analyses of dryland biological soil crusts highlight lichens as an important regulator of microbial communities S Maier, TSB Schmidt, L Zheng, T Peer, V Wagner, M Grube Biodiversity and Conservation 23 (7), 1735-1755, 2014	103	2014
proGenomes2: an improved database for accurate and consistent habitat, taxonomic and functional annotations of prokaryotic genomes DR Mende, I Letunic, OM Maistrenko, TSB Schmidt, A Milanese, L Paoli, ... Nucleic Acids Research 48 (D1), D621-D625, 2020	101	2020

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