| SOAPnuke: a MapReduce acceleration-supported software for integrated quality control and preprocessing of high-throughput sequencing data Y Chen, Y Chen, C Shi, Z Huang, Y Zhang, S Li, Y Li, J Ye, C Yu, Z Li, ... Gigascience 7 (1), gix120, 2018 | 1479 | 2018 |
| WEGO 2.0: a web tool for analyzing and plotting GO annotations, 2018 update J Ye, Y Zhang, H Cui, J Liu, Y Wu, Y Cheng, H Xu, X Huang, S Li, A Zhou, ... Nucleic acids research 46 (W1), W71-W75, 2018 | 528 | 2018 |
| Genomic analyses from non-invasive prenatal testing reveal genetic associations, patterns of viral infections, and Chinese population history S Liu, S Huang, F Chen, L Zhao, Y Yuan, SS Francis, L Fang, Z Li, L Lin, ... Cell 175 (2), 347-359. e14, 2018 | 246 | 2018 |
| Single-cell spatial transcriptome reveals cell-type organization in the macaque cortex A Chen, Y Sun, Y Lei, C Li, S Liao, J Meng, Y Bai, Z Liu, Z Liang, Z Zhu, ... Cell 186 (17), 3726-3743. e24, 2023 | 102 | 2023 |
| Computational approaches and challenges in spatial transcriptomics S Fang, B Chen, Y Zhang, H Sun, L Liu, S Liu, Y Li, X Xu Genomics, Proteomics & Bioinformatics 21 (1), 24-47, 2023 | 74 | 2023 |
| Whole-genome sequencing of 175 Mongolians uncovers population-specific genetic architecture and gene flow throughout North and East Asia H Bai, X Guo, N Narisu, T Lan, Q Wu, Y Xing, Y Zhang, SR Bond, Z Pei, ... Nature genetics 50 (12), 1696-1704, 2018 | 60 | 2018 |
| Spatial-ID: a cell typing method for spatially resolved transcriptomics via transfer learning and spatial embedding R Shen, L Liu, Z Wu, Y Zhang, Z Yuan, J Guo, F Yang, C Zhang, B Chen, ... Nature communications 13 (1), 7640, 2022 | 49 | 2022 |
| The complete and fully-phased diploid genome of a male Han Chinese C Yang, Y Zhou, Y Song, D Wu, Y Zeng, L Nie, P Liu, S Zhang, G Chen, ... Cell Research 33 (10), 745-761, 2023 | 38 | 2023 |
| SOAPTyping: an open-source and cross-platform tool for sequence-based typing for HLA class I and II alleles Y Zhang, Y Chen, H Xu, J Fang, Z Zhao, W Hu, X Yang, J Ye, Y Cheng, ... BMC bioinformatics 21, 1-9, 2020 | 9 | 2020 |
| Deep sequencing of 1320 genes reveals the landscape of protein-truncating variants and their contribution to psoriasis in 19,973 Chinese individuals H Xu, Q Zhen, M Bai, L Fang, Y Zhang, B Li, H Ge, S Moon, W Chen, W Fu, ... Genome Research 31 (7), 1150-1158, 2021 | 7 | 2021 |
| SOAPMetaS: profiling large metagenome datasets efficiently on distributed clusters S He, Z Huang, X Wang, L Fang, S Li, Y Zhang, G Zhang Bioinformatics 37 (7), 1021-1023, 2021 | 2 | 2021 |