Xiaojie Qiu

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Cole TrapnellAssociate Professor, Dept. of Genome Sciences, University of WashingtonVerificeret mail på uw.edu
Jay ShendureProfessor of Genome Sciences, University of WashingtonVerificeret mail på uw.edu
Li WangUniversity of Texas at ArlingtonVerificeret mail på uta.edu
Jonathan S. PackerForesite LabsVerificeret mail på foresitelabs.com
Hannah A PlinerUniversity of WashingtonVerificeret mail på uw.edu
Junyue CaoThe Rockefeller UniversityVerificeret mail på rockefeller.edu
Andrew J HillTune TherapeuticsVerificeret mail på u.washington.edu
Darren CusanovichUniversity of ArizonaVerificeret mail på email.arizona.edu
José L. McFaline-FigueroaAssistant Professor of Biomedical Engineering, Columbia UniversityVerificeret mail på columbia.edu
Yi-An MaUC San DiegoVerificeret mail på ucsd.edu
Andrew C AdeyProfessor of Molecular & Medical Genetics, Oregon Health & Science UniversityVerificeret mail på ohsu.edu
Malte SpielmannInstitute of Human Genetics, University of Lübeck & Kiel UniversityVerificeret mail på uw.edu
Jonathan S. WeissmanUCSF/HHMIVerificeret mail på ucsf.edu
Joseph ReplogleMD PhD, PGY1 @ MGH/Harvard Medical SchoolVerificeret mail på wi.mit.edu
Sanjay SrivatsanAssistant Professor Fred Hutch Cancer CenterVerificeret mail på fredhutch.org
Ying TangProfessor, University of Electronic Science and Technology of ChinaVerificeret mail på uestc.edu.cn
Raghav ChawlaUniversity of Washington, Seattle Children's Hospital, Fred Hutchinson Cancer Research CenterVerificeret mail på uw.edu
Kyung Hoi (Joseph) MinSoftware Engineer, Ginkgo BioworksVerificeret mail på alum.mit.edu
Delasa AghamirzaieSenior Bioinformatics Scientist at illuminaVerificeret mail på vt.edu
Vijay RamaniAssistant Professor, Gladstone Institutes / UCSFVerificeret mail på ucsf.edu

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Xiaojie Qiu

Assistant Professor, BASE, Department of Genetics & Computer Science, Stanford

Verificeret mail på stanford.edu - Startside

Predictive genomics Single cell genomics spatial genomics developmental biology systems biology


Titel Sortér efter henvisninger Sortér efter årstal Sortér efter titel	Citeret af Citeret af	År
Reversed graph embedding resolves complex single-cell trajectories X Qiu, Q Mao, Y Tang, L Wang, R Chawla, HA Pliner, C Trapnell Nature methods 14 (10), 979-982, 2017	3609	2017
The single-cell transcriptional landscape of mammalian organogenesis J Cao, M Spielmann, X Qiu, X Huang, DM Ibrahim, AJ Hill, F Zhang, ... Nature 566 (7745), 496-502, 2019	3193	2019
Single-cell mRNA quantification and differential analysis with Census X Qiu, A Hill, J Packer, D Lin, YA Ma, C Trapnell Nature methods 14 (3), 309-315, 2017	1525	2017
Comprehensive single-cell transcriptional profiling of a multicellular organism J Cao, JS Packer, V Ramani, DA Cusanovich, C Huynh, R Daza, X Qiu, ... Science 357 (6352), 661-667, 2017	1451	2017
Spatiotemporal transcriptomic atlas of mouse organogenesis using DNA nanoball-patterned arrays A Chen, S Liao, M Cheng, K Ma, L Wu, Y Lai, X Qiu, J Yang, J Xu, S Hao, ... Cell 185 (10), 1777-1792. e21, 2022	941	2022
Cicero predicts cis-regulatory DNA interactions from single-cell chromatin accessibility data HA Pliner, JS Packer, JL McFaline-Figueroa, DA Cusanovich, RM Daza, ... Molecular cell 71 (5), 858-871. e8, 2018	711	2018
The cis-regulatory dynamics of embryonic development at single-cell resolution DA Cusanovich, JP Reddington, DA Garfield, RM Daza, D Aghamirzaie, ... Nature 555 (7697), 538-542, 2018	365	2018
Mapping transcriptomic vector fields of single cells X Qiu, Y Zhang, JD Martin-Rufino, C Weng, S Hosseinzadeh, D Yang, ... Cell 185 (4), 690-711. e45, 2022	340	2022
Single-cell transcriptomics reveals receptor transformations during olfactory neurogenesis NK Hanchate, K Kondoh, Z Lu, D Kuang, X Ye, X Qiu, L Pachter, ... Science 350 (6265), 1251-1255, 2015	236	2015
Lineage tracing reveals the phylodynamics, plasticity, and paths of tumor evolution D Yang, MG Jones, S Naranjo, WM Rideout, KHJ Min, R Ho, W Wu, ... Cell 185 (11), 1905-1923. e25, 2022	217	2022
Inferring causal gene regulatory networks from coupled single-cell expression dynamics using scribe X Qiu, A Rahimzamani, L Wang, B Ren, Q Mao, T Durham, ... Cell systems 10 (3), 265-274. e11, 2020	184*	2020
Single-cell Stereo-seq reveals induced progenitor cells involved in axolotl brain regeneration X Wei, S Fu, H Li, Y Liu, S Wang, W Feng, Y Yang, X Liu, YY Zeng, ... Science 377 (6610), eabp9444, 2022	170	2022
A pooled single-cell genetic screen identifies regulatory checkpoints in the continuum of the epithelial-to-mesenchymal transition JL McFaline-Figueroa, AJ Hill, X Qiu, D Jackson, J Shendure, C Trapnell Nature genetics 51 (9), 1389-1398, 2019	168	2019
Massively parallel and time-resolved RNA sequencing in single cells with scNT-seq Q Qiu, P Hu, X Qiu, KW Govek, PG Cámara, H Wu Nature methods 17 (10), 991-1001, 2020	151	2020
Thyroid hormone regulates distinct paths to maturation in pigment cell lineages LM Saunders, AK Mishra, AJ Aman, VM Lewis, MB Toomey, JS Packer, ... Elife 8, e45181, 2019	133	2019
Aligning single-cell developmental and reprogramming trajectories identifies molecular determinants of myogenic reprogramming outcome D Cacchiarelli, X Qiu, S Srivatsan, A Manfredi, M Ziller, E Overbey, ... Cell Systems 7 (3), 258-268. e3, 2018	82	2018
Massively parallel base editing to map variant effects in human hematopoiesis JD Martin-Rufino, N Castano, M Pang, EI Grody, S Joubran, A Caulier, ... Cell 186 (11), 2456-2474. e24, 2023	73	2023
Deciphering cell states and genealogies of human haematopoiesis C Weng, F Yu, D Yang, M Poeschla, LA Liggett, MG Jones, X Qiu, ... Nature 627 (8003), 389-398, 2024	54	2024
Spatiotemporally resolved transcriptomics reveals the subcellular RNA kinetic landscape J Ren, H Zhou, H Zeng, CK Wang, J Huang, X Qiu, X Sui, Q Li, X Wu, ... Nature Methods 20 (5), 695-705, 2023	36	2023
From understanding the development landscape of the canonical fate-switch pair to constructing a dynamic landscape for two-step neural differentiation X Qiu, S Ding, T Shi PloS one 7 (12), e49271, 2012	35	2012

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