| A unified drug–target interaction prediction framework based on knowledge graph and recommendation system Q Ye, CY Hsieh, Z Yang, Y Kang, J Chen, D Cao, S He, T Hou Nature communications 12 (1), 6775, 2021 | 200 | 2021 |
| Current advances in ligand‐based target prediction SQ Yang, Q Ye, JJ Ding, Ming‐Zhu Yin, AP Lu, X Chen, TJ Hou, DS Cao Wiley Interdisciplinary Reviews: Computational Molecular Science 11 (3), e1504, 2021 | 38 | 2021 |
| Identification of active molecules against Mycobacterium tuberculosis through machine learning Q Ye, X Chai, D Jiang, L Yang, C Shen, X Zhang, D Li, D Cao, T Hou Briefings in Bioinformatics 22 (5), bbab068, 2021 | 37 | 2021 |
| Opportunities for overcoming tuberculosis: Emerging targets and their inhibitors L Yang, X Hu, X Chai, Q Ye, J Pang, D Li, T Hou Drug Discovery Today 27 (1), 326-336, 2022 | 20 | 2022 |
| TB-IECS: an accurate machine learning-based scoring function for virtual screening X Zhang, C Shen, D Jiang, J Zhang, Q Ye, L Xu, T Hou, P Pan, Y Kang Journal of Cheminformatics 15 (1), 63, 2023 | 13 | 2023 |
| ASFP (Artificial Intelligence based Scoring Function Platform): a web server for the development of customized scoring functions X Zhang, C Shen, X Guo, Z Wang, G Weng, Q Ye, G Wang, Q He, B Yang, ... Journal of Cheminformatics 13, 1-9, 2021 | 11 | 2021 |
| DrugFlow: an AI-driven one-stop platform for innovative drug discovery C Shen, J Song, CY Hsieh, D Cao, Y Kang, W Ye, Z Wu, J Wang, O Zhang, ... Journal of Chemical Information and Modeling 64 (14), 5381-5391, 2024 | 7 | 2024 |
| Discovery of N-(1-(6-Oxo-1,6-dihydropyrimidine)-pyrazole) Acetamide Derivatives as Novel Noncovalent DprE1 Inhibitors against Mycobacterium tuberculosis L Yang, X Hu, Y Lu, R Xu, Y Xu, WL Ma, MS Alam, T Zhang, X Chai, Y Lei, ... Journal of Medicinal Chemistry 67 (3), 1914-1931, 2024 | 5 | 2024 |
| Integrating multi-modal deep learning on knowledge graph for the discovery of synergistic drug combinations against infectious diseases Q Ye, R Xu, D Li, Y Kang, Y Deng, F Zhu, J Chen, S He, CY Hsieh, T Hou Cell Reports Physical Science 4 (8), 2023 | 5 | 2023 |
| Large language model-based natural language encoding could be all you need for drug biomedical association prediction H Zhang, Y Zhou, Z Zhang, H Sun, Z Pan, M Mou, W Zhang, Q Ye, T Hou, ... Analytical Chemistry 96 (30), 12395-12403, 2024 | 4 | 2024 |
| AttABseq: an attention-based deep learning prediction method for antigen–antibody binding affinity changes based on protein sequences R Jin, Q Ye, J Wang, Z Cao, D Jiang, T Wang, Y Kang, W Xu, CY Hsieh, ... Briefings in Bioinformatics 25 (4), bbae304, 2024 | 3 | 2024 |
| Enhancing generic reaction yield prediction through reaction condition-based contrastive learning X Yin, CY Hsieh, X Wang, Z Wu, Q Ye, H Bao, Y Deng, H Chen, P Luo, ... Research 7, 0292, 2024 | 3 | 2024 |