| HexServer: an FFT-based protein docking server powered by graphics processors G Macindoe, L Mavridis, V Venkatraman, MD Devignes, DW Ritchie Nucleic acids research 38 (suppl_2), W445-W449, 2010 | 767 | 2010 |
| Protein docking using spherical polar Fourier correlations DW Ritchie, GJL Kemp Proteins: Structure, Function, and Bioinformatics 39 (2), 178-194, 2000 | 747 | 2000 |
| The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens N Zhou, Y Jiang, TR Bergquist, AJ Lee, BZ Kacsoh, AW Crocker, ... Genome biology 20, 1-23, 2019 | 438 | 2019 |
| Ultra-fast FFT protein docking on graphics processors DW Ritchie, V Venkatraman Bioinformatics 26 (19), 2398-2405, 2010 | 436 | 2010 |
| Recent progress and future directions in protein-protein docking DW Ritchie Current protein and peptide science 9 (1), 1-15, 2008 | 416 | 2008 |
| Evaluation of protein docking predictions using Hex 3.1 in CAPRI rounds 1 and 2 DW Ritchie Proteins: Structure, Function, and Bioinformatics 52 (1), 98-106, 2003 | 306 | 2003 |
| Docking essential dynamics eigenstructures D Mustard, DW Ritchie Proteins: Structure, function, and bioinformatics 60 (2), 269-274, 2005 | 296 | 2005 |
| Accelerating and focusing protein–protein docking correlations using multi-dimensional rotational FFT generating functions DW Ritchie, D Kozakov, S Vajda Bioinformatics 24 (17), 1865-1873, 2008 | 259 | 2008 |
| Fast computation, rotation, and comparison of low resolution spherical harmonic molecular surfaces DW Ritchie, GJL Kemp Journal of Computational Chemistry 20 (4), 383-395, 1999 | 254 | 1999 |
| Terminating eukaryote translation: domain 1 of release factor eRF1 functions in stop codon recognition G Bertram, HA Bell, DW Ritchie, G Fullerton, I Stansfield Rna 6 (9), 1236-1247, 2000 | 251 | 2000 |
| Prediction of homoprotein and heteroprotein complexes by protein docking and template‐based modeling: a CASP‐CAPRI experiment MF Lensink, S Velankar, A Kryshtafovych, SY Huang, ... Proteins: Structure, Function, and Bioinformatics 84, 323-348, 2016 | 168 | 2016 |
| Comprehensive comparison of ligand-based virtual screening tools against the DUD data set reveals limitations of current 3D methods V Venkatraman, VI Pérez-Nueno, L Mavridis, DW Ritchie Journal of chemical information and modeling 50 (12), 2079-2093, 2010 | 152 | 2010 |
| Protein docking using case‐based reasoning AW Ghoorah, MD Devignes, M Smaïl‐Tabbone, DW Ritchie Proteins: Structure, Function, and Bioinformatics 81 (12), 2150-2158, 2013 | 135 | 2013 |
| Blind prediction of homo‐and hetero‐protein complexes: The CASP13‐CAPRI experiment MF Lensink, G Brysbaert, N Nadzirin, S Velankar, RAG Chaleil, T Gerguri, ... Proteins: Structure, Function, and Bioinformatics 87 (12), 1200-1221, 2019 | 127 | 2019 |
| Toward high throughput 3D virtual screening using spherical harmonic surface representations L Mavridis, BD Hudson, DW Ritchie Journal of chemical information and modeling 47 (5), 1787-1796, 2007 | 94 | 2007 |
| Comparison of ligand-based and receptor-based virtual screening of HIV entry inhibitors for the CXCR4 and CCR5 receptors using 3D ligand shape matching and ligand− receptor docking VI Pérez-Nueno, DW Ritchie, O Rabal, R Pascual, JI Borrell, J Teixidó Journal of chemical information and modeling 48 (3), 509-533, 2008 | 93 | 2008 |
| Protein–protein docking by fast generalized Fourier transforms on 5D rotational manifolds D Padhorny, A Kazennov, BS Zerbe, KA Porter, B Xia, SE Mottarella, ... Proceedings of the National Academy of Sciences 113 (30), E4286-E4293, 2016 | 78 | 2016 |
| PDB-wide identification of biological assemblies from conserved quaternary structure geometry S Dey, DW Ritchie, ED Levy Nature methods 15 (1), 67-72, 2018 | 76 | 2018 |
| High-order analytic translation matrix elements for real-space six-dimensional polar Fourier correlations DW Ritchie Applied Crystallography 38 (5), 808-818, 2005 | 76 | 2005 |
| Blind prediction of interfacial water positions in CAPRI MF Lensink, IH Moal, PA Bates, PL Kastritis, ASJ Melquiond, E Karaca, ... Proteins: Structure, Function, and Bioinformatics 82 (4), 620-632, 2014 | 63 | 2014 |
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