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Yue Andy Qi, PhD
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TDP-43 loss and ALS-risk SNPs drive mis-splicing and depletion of UNC13A
AL Brown, OG Wilkins, MJ Keuss, SE Hill, M Zanovello, WC Lee, ...
Nature 603 (7899), 131-137, 2022
3322022
A reference human induced pluripotent stem cell line for large-scale collaborative studies
CB Pantazis, A Yang, E Lara, JA McDonough, C Blauwendraat, L Peng, ...
Cell Stem Cell 29 (12), 1685-1702. e22, 2022
1332022
A cellular taxonomy of the adult human spinal cord
A Yadav, KJE Matson, L Li, I Hua, J Petrescu, K Kang, MR Alkaslasi, ...
Neuron 111 (3), 328-344. e7, 2023
1192023
Mis-spliced transcripts generate de novo proteins in TDP-43–related ALS/FTD
S Seddighi, YA Qi, AL Brown, OG Wilkins, C Bereda, C Belair, YJ Zhang, ...
Science translational medicine 16 (734), eadg7162, 2024
822024
Application of mass spectrometry-based MHC immunopeptidome profiling in neoantigen identification for tumor immunotherapy
X Zhang, Y Qi, Q Zhang, W Liu
Biomedicine & Pharmacotherapy 120, 109542, 2019
642019
Immuno-transcriptomic profiling of extracranial pediatric solid malignancies
AS Brohl, S Sindiri, JS Wei, D Milewski, HC Chou, YK Song, X Wen, ...
Cell reports 37 (8), 2021
472021
Quantitative phosphoproteomics reveals novel phosphorylation events in insulin signaling regulated by protein phosphatase 1 regulatory subunit 12A
X Zhang, D Ma, M Caruso, M Lewis, Y Qi, Z Yi
Journal of proteomics 109, 63-75, 2014
372014
A Fully Automated FAIMS-DIA Mass Spectrometry-Based Proteomic Pipeline
L Reilly, E Lara, DM Ramos, Z Li, CB Pantazis, J Stadler, M Santiana, ...
Cell Reports Methods 3 (10), 2023
32*2023
NAD metabolism modulates inflammation and mitochondria function in diabetic kidney disease
K Myakala, XX Wang, NV Shults, E Krawczyk, BA Jones, X Yang, ...
Journal of Biological Chemistry 299 (8), 2023
272023
TDP-43 and other hnRNPs regulate cryptic exon inclusion of a key ALS/FTD risk gene, UNC13A
Y Koike, S Pickles, V Estades Ayuso, K Jansen-West, YA Qi, Z Li, ...
PLoS biology 21 (3), e3002028, 2023
27*2023
Mis-spliced transcripts generate de novo proteins in TDP-43-related ALS
S Seddighi, YA Qi, AL Brown, OG Wilkins, C Bereda, C Belair, Y Zhang, ...
FTD. bioRxiv 2023 (2023.525149), 10.1126, 2023
252023
Proteogenomic analysis unveils the HLA class I-presented immunopeptidome in melanoma and EGFR-mutant lung adenocarcinoma
YA Qi, TK Maity, CM Cultraro, V Misra, X Zhang, C Ade, S Gao, D Milewski, ...
Molecular & Cellular Proteomics 20, 100136, 2021
242021
Consortium
AL Brown, OG Wilkins, MJ Keuss, SE Hill, M Zanovello, WC Lee, ...
NA, Newcombe, J., Gustavsson, EK, Seddighi, S.,… Maggin, D, 2022
232022
Quantitative proteomics reveals novel protein interaction partners of PP2A catalytic subunit in pancreatic β-cells
X Zhang, D Damacharla, D Ma, Y Qi, R Tagett, S Draghici, A Kowluru, Z Yi
Molecular and cellular endocrinology 424, 1-11, 2016
232016
Application of Aligned-UMAP to longitudinal biomedical studies
A Dadu, VK Satone, R Kaur, MJ Koretsky, H Iwaki, YA Qi, DM Ramos, ...
Patterns 4 (6), 2023
182023
Estrogen-related receptor agonism reverses mitochondrial dysfunction and inflammation in the aging kidney
XX Wang, K Myakala, AE Libby, E Krawczyk, J Panov, BA Jones, ...
The American Journal of Pathology 193 (12), 1969-1987, 2023
172023
A reference induced pluripotent stem cell line for large-scale collaborative studies
CB Pantazis, A Yang, E Lara, JA McDonough, C Blauwendraat, L Peng, ...
Biorxiv, 2021.12. 15.472643, 2021
142021
TMEM106B core deposition associates with TDP-43 pathology and is increased in risk SNP carriers for frontotemporal dementia
JD Marks, VE Ayuso, Y Carlomagno, M Yue, TW Todd, Y Hao, Z Li, ...
Science translational medicine 16 (730), eadf9735, 2024
132024
Kinome profiling reveals abnormal activity of kinases in skeletal muscle from adults with obesity and insulin resistance
Y Qi, X Zhang, B Seyoum, Z Msallaty, A Mallisho, M Caruso, ...
The Journal of Clinical Endocrinology & Metabolism 105 (3), 644-659, 2020
112020
Quantitative targeted proteomic analysis of potential markers of tyrosine kinase inhibitor (TKI) sensitivity in EGFR mutated lung adenocarcinoma
S Awasthi, T Maity, BL Oyler, Y Qi, X Zhang, DR Goodlett, U Guha
Journal of proteomics 189, 48-59, 2018
112018
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