TDP-43 loss and ALS-risk SNPs drive mis-splicing and depletion of UNC13A AL Brown, OG Wilkins, MJ Keuss, SE Hill, M Zanovello, WC Lee, ... Nature 603 (7899), 131-137, 2022 | 332 | 2022 |
A reference human induced pluripotent stem cell line for large-scale collaborative studies CB Pantazis, A Yang, E Lara, JA McDonough, C Blauwendraat, L Peng, ... Cell Stem Cell 29 (12), 1685-1702. e22, 2022 | 133 | 2022 |
A cellular taxonomy of the adult human spinal cord A Yadav, KJE Matson, L Li, I Hua, J Petrescu, K Kang, MR Alkaslasi, ... Neuron 111 (3), 328-344. e7, 2023 | 119 | 2023 |
Mis-spliced transcripts generate de novo proteins in TDP-43–related ALS/FTD S Seddighi, YA Qi, AL Brown, OG Wilkins, C Bereda, C Belair, YJ Zhang, ... Science translational medicine 16 (734), eadg7162, 2024 | 82 | 2024 |
Application of mass spectrometry-based MHC immunopeptidome profiling in neoantigen identification for tumor immunotherapy X Zhang, Y Qi, Q Zhang, W Liu Biomedicine & Pharmacotherapy 120, 109542, 2019 | 64 | 2019 |
Immuno-transcriptomic profiling of extracranial pediatric solid malignancies AS Brohl, S Sindiri, JS Wei, D Milewski, HC Chou, YK Song, X Wen, ... Cell reports 37 (8), 2021 | 47 | 2021 |
Quantitative phosphoproteomics reveals novel phosphorylation events in insulin signaling regulated by protein phosphatase 1 regulatory subunit 12A X Zhang, D Ma, M Caruso, M Lewis, Y Qi, Z Yi Journal of proteomics 109, 63-75, 2014 | 37 | 2014 |
A Fully Automated FAIMS-DIA Mass Spectrometry-Based Proteomic Pipeline L Reilly, E Lara, DM Ramos, Z Li, CB Pantazis, J Stadler, M Santiana, ... Cell Reports Methods 3 (10), 2023 | 32* | 2023 |
NAD metabolism modulates inflammation and mitochondria function in diabetic kidney disease K Myakala, XX Wang, NV Shults, E Krawczyk, BA Jones, X Yang, ... Journal of Biological Chemistry 299 (8), 2023 | 27 | 2023 |
TDP-43 and other hnRNPs regulate cryptic exon inclusion of a key ALS/FTD risk gene, UNC13A Y Koike, S Pickles, V Estades Ayuso, K Jansen-West, YA Qi, Z Li, ... PLoS biology 21 (3), e3002028, 2023 | 27* | 2023 |
Mis-spliced transcripts generate de novo proteins in TDP-43-related ALS S Seddighi, YA Qi, AL Brown, OG Wilkins, C Bereda, C Belair, Y Zhang, ... FTD. bioRxiv 2023 (2023.525149), 10.1126, 2023 | 25 | 2023 |
Proteogenomic analysis unveils the HLA class I-presented immunopeptidome in melanoma and EGFR-mutant lung adenocarcinoma YA Qi, TK Maity, CM Cultraro, V Misra, X Zhang, C Ade, S Gao, D Milewski, ... Molecular & Cellular Proteomics 20, 100136, 2021 | 24 | 2021 |
Consortium AL Brown, OG Wilkins, MJ Keuss, SE Hill, M Zanovello, WC Lee, ... NA, Newcombe, J., Gustavsson, EK, Seddighi, S.,… Maggin, D, 2022 | 23 | 2022 |
Quantitative proteomics reveals novel protein interaction partners of PP2A catalytic subunit in pancreatic β-cells X Zhang, D Damacharla, D Ma, Y Qi, R Tagett, S Draghici, A Kowluru, Z Yi Molecular and cellular endocrinology 424, 1-11, 2016 | 23 | 2016 |
Application of Aligned-UMAP to longitudinal biomedical studies A Dadu, VK Satone, R Kaur, MJ Koretsky, H Iwaki, YA Qi, DM Ramos, ... Patterns 4 (6), 2023 | 18 | 2023 |
Estrogen-related receptor agonism reverses mitochondrial dysfunction and inflammation in the aging kidney XX Wang, K Myakala, AE Libby, E Krawczyk, J Panov, BA Jones, ... The American Journal of Pathology 193 (12), 1969-1987, 2023 | 17 | 2023 |
A reference induced pluripotent stem cell line for large-scale collaborative studies CB Pantazis, A Yang, E Lara, JA McDonough, C Blauwendraat, L Peng, ... Biorxiv, 2021.12. 15.472643, 2021 | 14 | 2021 |
TMEM106B core deposition associates with TDP-43 pathology and is increased in risk SNP carriers for frontotemporal dementia JD Marks, VE Ayuso, Y Carlomagno, M Yue, TW Todd, Y Hao, Z Li, ... Science translational medicine 16 (730), eadf9735, 2024 | 13 | 2024 |
Kinome profiling reveals abnormal activity of kinases in skeletal muscle from adults with obesity and insulin resistance Y Qi, X Zhang, B Seyoum, Z Msallaty, A Mallisho, M Caruso, ... The Journal of Clinical Endocrinology & Metabolism 105 (3), 644-659, 2020 | 11 | 2020 |
Quantitative targeted proteomic analysis of potential markers of tyrosine kinase inhibitor (TKI) sensitivity in EGFR mutated lung adenocarcinoma S Awasthi, T Maity, BL Oyler, Y Qi, X Zhang, DR Goodlett, U Guha Journal of proteomics 189, 48-59, 2018 | 11 | 2018 |