John D. Chodera

Citeret af

	Alle	Siden 2020
Henvisninger	24927	14611
h-index	66	56
i10-indeks	132	122

3300

1650

825

2475

200720082009201020112012201320142015201620172018201920202021202220232024202584 182 297 386 498 656 731 900 980 1087 1173 1574 1597 2182 2725 2876 2911 3294 597

Offentlig adgang

Se alle

104 artikler

0 artikler

tilgængelige

ikke tilgængelige

Baseret på krav i forbindelse med finansiering

Medforfattere

David MobleyProfessor, University of California, IrvineVerificeret mail på uci.edu
Michael R. ShirtsProfessor of Chemical and Biological Engineering, University of Colorado BoulderVerificeret mail på colorado.edu
Vijay PandeAndreessen Horowitz, Stanford UniversityVerificeret mail på stanford.edu
Ken A. DillDirector of Laufer Center, Stony Brook UniversityVerificeret mail på laufercenter.org
Noe FrankMicrosoft ResearchVerificeret mail på microsoft.com
Lee-Ping WangDepartment of Chemistry, UC DavisVerificeret mail på ucdavis.edu
Kyle A. BeauchampStanford, Tempus,Verificeret mail på tempus.com
Jan-Hendrik PrinzMemorial Sloan Kettering Cancer CenterVerificeret mail på choderalab.org
A. S. RustenburgWeill Cornell Graduate SchoolVerificeret mail på med.cornell.edu
William SwopeIBM Almaden Research CenterVerificeret mail på gene.com
Carlos Jose BustamanteUniversity of California, BerkeleyVerificeret mail på alice.berkeley.edu
Jay PonderDepartment of Chemistry, Washington UniversityVerificeret mail på dasher.wustl.edu
Pengyu RenDepartment of Biomedical Engineering, The University of Texas at AustinVerificeret mail på mail.utexas.edu
David MinhIllinois Institute of TechnologyVerificeret mail på iit.edu
Gavin E. CrooksNormal ComputingVerificeret mail på berkeley.edu
Bettina G. KellerProfessor of Theoretical Chemistry, Freie Universität BerlinVerificeret mail på fu-berlin.de
Craig ThompsonMemorial Sloan Kettering Cancer CenterVerificeret mail på mskcc.org
Imran S HaqueRecursion PharmaceuticalsVerificeret mail på cs.stanford.edu
Chuanjie WuSchrodinger, Inc.Verificeret mail på schrodinger.com
Michael J. SchniedersProfessor of Biomedical Engineering and Biochemistry, The University of IowaVerificeret mail på uiowa.edu

Følg

John D. Chodera

Memorial Sloan-Kettering Cancer Center

Verificeret mail på mskcc.org - Startside

Drug Discovery Statistical Mechanics Computational Biophysics Biophysics Statistical Inference


Titel Sortér efter henvisninger Sortér efter årstal Sortér efter titel	Citeret af Citeret af	År
OpenMM 7: Rapid development of high performance algorithms for molecular dynamics P Eastman, J Swails, JD Chodera, RT McGibbon, Y Zhao, KA Beauchamp, ... PLoS computational biology 13 (7), e1005659, 2017	2431	2017
Statistically optimal analysis of samples from multiple equilibrium states MR Shirts, JD Chodera The Journal of chemical physics 129, 124105, 2008	1947	2008
Current status of the AMOEBA polarizable force field JW Ponder, C Wu, P Ren, VS Pande, JD Chodera, MJ Schnieders, ... The Journal of Physical Chemistry B 114 (8), 2549-2564, 2010	1559	2010
Markov models of molecular kinetics: Generation and validation JH Prinz, H Wu, M Sarich, B Keller, M Senne, M Held, JD Chodera, ... The Journal of chemical physics 134, 174105, 2011	1351	2011
Markov state models of biomolecular conformational dynamics JD Chodera, F Noé Current opinion in structural biology 25, 135-144, 2014	795	2014
Automatic discovery of metastable states for the construction of Markov models of macromolecular conformational dynamics JD Chodera, N Singhal, VS Pande, KA Dill, WC Swope The Journal of chemical physics 126, 155101, 2007	754	2007
OpenMM 4: a reusable, extensible, hardware independent library for high performance molecular simulation P Eastman, MS Friedrichs, JD Chodera, RJ Radmer, CM Bruns, JP Ku, ... Journal of chemical theory and computation 9 (1), 461-469, 2013	738	2013
Alchemical free energy methods for drug discovery: progress and challenges JD Chodera, DL Mobley, MR Shirts, RW Dixon, K Branson, VS Pande Current Opinion in Structural Biology, 2011	645	2011
Circulating SARS-CoV-2 spike N439K variants maintain fitness while evading antibody-mediated immunity EC Thomson, LE Rosen, JG Shepherd, R Spreafico, A da Silva Filipe, ... Cell 184 (5), 1171-1187. e20, 2021	609	2021
Entropy-enthalpy compensation: role and ramifications in biomolecular ligand recognition and design JD Chodera, DL Mobley Annual review of biophysics 42 (1), 121-142, 2013	582	2013
Use of the weighted histogram analysis method for the analysis of simulated and parallel tempering simulations JD Chodera, WC Swope, JW Pitera, C Seok, KA Dill Journal of Chemical Theory and Computation 3 (1), 26-41, 2007	554	2007
Hypoxia induces production of L-2-hydroxyglutarate AM Intlekofer, RG Dematteo, S Venneti, LWS Finley, C Lu, AR Judkins, ... Cell metabolism 22 (2), 304-311, 2015	503	2015
SARS-CoV-2 RBD antibodies that maximize breadth and resistance to escape TN Starr, N Czudnochowski, Z Liu, F Zatta, YJ Park, A Addetia, D Pinto, ... Nature 597 (7874), 97-102, 2021	463	2021
Ensemble docking in drug discovery RE Amaro, J Baudry, J Chodera, Ö Demir, JA McCammon, Y Miao, ... Biophysical journal 114 (10), 2271-2278, 2018	455	2018
Systematic improvement of a classical molecular model of water LP Wang, T Head-Gordon, JW Ponder, P Ren, JD Chodera, PK Eastman, ... The Journal of Physical Chemistry B 117 (34), 9956-9972, 2013	374	2013
The protein folding problem: when will it be solved? KA Dill, SB Ozkan, TR Weikl, JD Chodera, VA Voelz Current opinion in structural biology 17 (3), 342-346, 2007	363	2007
Predicting absolute ligand binding free energies to a simple model site DL Mobley, AP Graves, JD Chodera, AC McReynolds, BK Shoichet, ... Journal of molecular biology 371 (4), 1118-1134, 2007	355	2007
The ribosome modulates nascent protein folding CM Kaiser, DH Goldman, JD Chodera, I Tinoco Jr, C Bustamante Science 334 (6063), 1723-1727, 2011	347	2011
On the use of orientational restraints and symmetry corrections in alchemical free energy calculations DL Mobley, JD Chodera, KA Dill The Journal of chemical physics 125, 084902, 2006	341	2006
Predicting small-molecule solvation free energies: an informal blind test for computational chemistry A Nicholls, DL Mobley, JP Guthrie, JD Chodera, CI Bayly, MD Cooper, ... Journal of medicinal chemistry 51 (4), 769-779, 2008	338	2008

Systemet kan ikke foretage handlingen nu. Prøv igen senere.

Artikler 1–20

Henvisninger pr. år

Dublerede henvisninger

Flettede henvisninger

Tilføj medforfattereMedforfattere

Følg

Citeret af

Medforfattere