| The future of biotic indices in the ecogenomic era: Integrating (e) DNA metabarcoding in biological assessment of aquatic ecosystems J Pawlowski, M Kelly-Quinn, F Altermatt, L Apothéloz-Perret-Gentil, P Beja, ... Science of the Total Environment 637, 1295-1310, 2018 | 520 | 2018 |
| Ecosystems monitoring powered by environmental genomics: a review of current strategies with an implementation roadmap T Cordier, L Alonso Sáez, L Apotheloz-Perret-Gentil, E Aylagas, ... Molecular Ecology 30 (13), 2937-2958, 2020 | 235 | 2020 |
| Predicting the ecological quality status of marine environments from eDNA metabarcoding data using supervised machine learning T Cordier, P Esling, F Lejzerowicz, J Visco, A Ouadahi, C Martins, ... Environmental Science & Technology 51 (16), 9118-9126, 2017 | 208 | 2017 |
| The composition of phyllosphere fungal assemblages of European beech (Fagus sylvatica) varies significantly along an elevation gradient T Cordier, C Robin, X Capdevielle, O Fabreguettes, ML Desprez‐Loustau, ... New Phytologist 196 (2), 510-519, 2012 | 195 | 2012 |
| Embracing environmental genomics and machine learning for routine biomonitoring T Cordier, A Lanzén, L Apothéloz-Perret-Gentil, T Stoeck, J Pawlowski Trends in Microbiology 27 (5), 387-397, 2019 | 182 | 2019 |
| Expanding ecological assessment by integrating microorganisms into routine freshwater biomonitoring M Sagova-Mareckova, J Boenigk, A Bouchez, K Cermakova, T Chonova, ... Water research 191, 116767, 2021 | 177 | 2021 |
| Spatial variability of phyllosphere fungal assemblages: genetic distance predominates over geographic distance in a European beech stand (Fagus sylvatica) T Cordier, C Robin, X Capdevielle, ML Desprez-Loustau, C Vacher Fungal Ecology 5 (5), 509-520, 2012 | 170 | 2012 |
| Supervised machine learning outperforms taxonomy‐based environmental DNA metabarcoding applied to biomonitoring T Cordier, D Forster, Y Dufresne, CIM Martins, T Stoeck, J Pawlowski Molecular Ecology Resources 18 (6), 1381–1391, 2018 | 160 | 2018 |
| Environmental DNA metabarcoding for benthic monitoring: A review of sediment sampling and DNA extraction methods J Pawlowski, K Bruce, K Panksep, FI Aguirre, S Amalfitano, ... Science of the Total Environment 818, 151783, 2022 | 144 | 2022 |
| Leaf and root-associated fungal assemblages do not follow similar elevational diversity patterns A Coince, T Cordier, J Lengellé, E Defossez, C Vacher, C Robin, M Buée, ... PloS ONE 9 (6), e100668, 2014 | 130 | 2014 |
| Environmental DNA metabarcoding of benthic bacterial communities indicates the benthic footprint of salmon aquaculture T Stoeck, L Frühe, D Forster, T Cordier, CIM Martins, J Pawlowski Marine Pollution Bulletin 127, 139-149, 2018 | 106 | 2018 |
| Key questions for next-generation biomonitoring A Makiola, Z Greg, DJ Baird, A Matthew, S Philip, A Bouchez, G Brennan, ... Frontiers in Environmental Science, 2019 | 92 | 2019 |
| Environmental DNA for biomonitoring J Pawlowski, A Bonin, F Boyer, T Cordier, P Taberlet Molecular ecology 30 (13), 2931-2936, 2021 | 85 | 2021 |
| Supervised machine learning is superior to indicator value inference in monitoring the environmental impacts of salmon aquaculture using eDNA metabarcodes L Frühe, T Cordier, V Dully, HW Breiner, G Lentendu, J Pawlowski, ... Molecular Ecology 30 (13), 2988-3006, 2020 | 85 | 2020 |
| SLIM: a flexible web application for the reproducible processing of environmental DNA metabarcoding data Y Dufresne, F Lejzerowicz, LA Perret-Gentil, J Pawlowski, T Cordier BMC bioinformatics 20 (1), 88, 2019 | 85 | 2019 |
| Multi-marker eDNA metabarcoding survey to assess the environmental impact of three offshore gas platforms in the North Adriatic Sea (Italy) T Cordier, F Frontalini, K Cermakova, L Apothéloz-Perret-Gentil, M Treglia, ... Marine environmental research 146, 24-34, 2019 | 79 | 2019 |
| Benthic foraminiferal metabarcoding and morphology-based assessment around three offshore gas platforms: Congruence and complementarity F Frontalini, T Cordier, E Balassi, EA du Chatelet, K Cermakova, ... Environment International 144, 106049, 2020 | 75 | 2020 |
| Monitoring the ecological status of rivers with diatom eDNA metabarcoding: a comparison of taxonomic markers and analytical approaches for the inference of a molecular diatom index L Apothéloz‐Perret‐Gentil, A Bouchez, T Cordier, A Cordonier, ... Molecular Ecology 30 (13), 2959-2968, 2020 | 71 | 2020 |
| Patterns of eukaryotic diversity from the surface to the deep-ocean sediment T Cordier, I Barrenechea Angeles, N Henry, F Lejzerowicz, C Berney, ... Science Advances 8 (5), eabj9309, 2022 | 69 | 2022 |
| Benthic monitoring of salmon farms in Norway using foraminiferal metabarcoding J Pawlowski, P Esling, F Lejzerowicz, T Cordier, JA Visco, CIM Martins, ... Aquaculture Environment Interactions 8, 371-386, 2016 | 64 | 2016 |
Pawlowski JanInstitute of Oceanology, Polish Academy of SciencesVerificeret mail på unige.ch