| Defining the core Arabidopsis thaliana root microbiome DS Lundberg, SL Lebeis, SH Paredes, S Yourstone, J Gehring, S Malfatti, ... Nature 488 (7409), 86-90, 2012 | 2915 | 2012 |
| Salicylic acid modulates colonization of the root microbiome by specific bacterial taxa SL Lebeis, SH Paredes, DS Lundberg, N Breakfield, J Gehring, ... Science 349 (6250), 860-864, 2015 | 1126 | 2015 |
| Modular, efficient and constant-memory single-cell RNA-seq preprocessing P Melsted, AS Booeshaghi, L Liu, F Gao, L Lu, KH Min, ... Nature biotechnology 39 (7), 813-818, 2021 | 408* | 2021 |
| Highly multiplexed single-cell RNA-seq by DNA oligonucleotide tagging of cellular proteins J Gehring, J Hwee Park, S Chen, M Thomson, L Pachter Nature biotechnology 38 (1), 35-38, 2020 | 140* | 2020 |
| Whole-animal multiplexed single-cell RNA-seq reveals transcriptional shifts across Clytia medusa cell types T Chari, B Weissbourd, J Gehring, A Ferraioli, L Leclère, M Herl, F Gao, ... Science Advances 7 (48), eabh1683, 2021 | 88* | 2021 |
| Principles of open source bioinstrumentation applied to the poseidon syringe pump system AS Booeshaghi, E da Veiga Beltrame, D Bannon, J Gehring, L Pachter Scientific reports 9 (1), 1-8, 2019 | 68 | 2019 |
| Engineering orthogonal polypeptide GalNAc-transferase and UDP-sugar pairs J Choi, LJS Wagner, SBPE Timmermans, SA Malaker, B Schumann, ... Journal of the American Chemical Society 141 (34), 13442-13453, 2019 | 66 | 2019 |
| Preliminary support for a “dry swab, extraction free” protocol for SARS-CoV-2 testing via RT-qPCR S Srivatsan, PD Han, K van Raay, CR Wolf, DJ McCulloch, AE Kim, ... BioRxiv 1 (January), 2020 | 53 | 2020 |
| SwabExpress: An end-to-end protocol for extraction-free COVID-19 testing S Srivatsan, S Heidl, B Pfau, BK Martin, PD Han, W Zhong, K van Raay, ... Clinical Chemistry 68 (1), 143-152, 2022 | 36 | 2022 |
| Sample multiplexing for single-cell RNA sequencing J Gehring, LS Pachter, S Chen, JH Park US Patent 11,492,610, 2022 | 24 | 2022 |
| Reliable and accurate diagnostics from highly multiplexed sequencing assays AS Booeshaghi, NB Lubock, AR Cooper, SW Simpkins, JS Bloom, ... Scientific Reports 10 (1), 21759, 2020 | 17* | 2020 |
| ProteinCartography: Comparing proteins with structure-based maps for interactive exploration P Avasthi, BM Bigge, FM Celebi, K Cheveralls, J Gehring, E McGeever, ... Arcadia Science, 2023 | 11 | 2023 |
| Low-cost, scalable, and automated fluid sampling for fluidics applications AS Booeshaghi, YA Kil, KHJ Min, J Gehring, L Pachter HardwareX 10, e00201, 2021 | 11 | 2021 |
| Quantifying orthogonal barcodes for sequence census assays AS Booeshaghi, KH Min, J Gehring, L Pachter Bioinformatics Advances 4 (1), vbad181, 2024 | 9 | 2024 |
| Efficient combinatorial bead barcoding E da Veiga Beltrame, J Gehring, A Tambe, LS Pachter, T Dilanyan US Patent App. 16/586,592, 2020 | 4 | 2020 |
| Gotta catch ‘em all: Agar microchambers for high-throughput single-cell live imaging P Avasthi, T Essock-Burns, G Garcia III, J Gehring, DQ Matus, DG Mets, ... Arcadia Science, 2023 | 3 | 2023 |
| The BUS Format for Single-Cell RNA-Seq Processing and Analysis F Gao, E da Veiga Beltrame, JA Gehring, KEE Hjoerleifsson, L Lu, ... Journal of Biomolecular Techniques: JBT 30 (Suppl), S62, 2019 | 2 | 2019 |
| Spatiotemporal dynamics of the developing zebrafish enteric nervous system at the whole-organ level C Li, J Gehring, ME Bronner Developmental Cell, 2024 | 1 | 2024 |
| Optics-free reconstruction of 2D images via DNA barcode proximity graphs H Liao, S Kottapalli, Y Huang, M Chaw, J Gehring, O Waltner, ... bioRxiv, 2024 | | 2024 |
| Combinatorial indexing and screening of clonal DNA fragments P Avasthi, J Gehring, I Kolb Arcadia Science, 2023 | | 2023 |
