James Taylor

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Anton NekrutenkoPenn State UniversityVerificeret mail på nekrut.org
Enis AfganResearch Scientist, Johns Hopkins UniversityVerificeret mail på jhu.edu
Jeremy GoecksAssistant Center Director, Research Informatics at the Moffitt Cancer CenterVerificeret mail på moffitt.org
Daniel BlankenbergCenter for Computational Life Sciences, Lerner Research Institute, Cleveland Clinic / Galaxy ProjectVerificeret mail på ccf.org
Ross C. HardisonProfessor Emeritus of Biochemistry and Molecular Biology, The Pennsylvania State UniversityVerificeret mail på psu.edu
Webb MillerPenn State University, UC Santa Barbara, ArizonaVerificeret mail på bx.psu.edu
Björn GrüningUniversity of FreiburgVerificeret mail på informatik.uni-freiburg.de
Dave BouvierComputational Scientist, Pennsylvania State UniversityVerificeret mail på bx.psu.edu
Francesca ChiaromonteProfessor of Statistics, Pennsylvania State University, Sant'Anna School of Advanced StudiesVerificeret mail på psu.edu
Yong ChengSt.Jude Children's Research HospitalVerificeret mail på stjude.org
Gherman UritskiyAmazon ResearchVerificeret mail på jhu.edu
Laura ElnitskiNHGRI, NIHVerificeret mail på mail.nih.gov
Nicola SoranzoEarlham InstituteVerificeret mail på earlham.ac.uk
Marius van den BeekSci-ScaleVerificeret mail på sci-scale.net
Jocelyne DiRuggieroJohns Hopkins UniversityVerificeret mail på jhu.edu
Belinda Giardinecomputer programmer, Penn State UniversityVerificeret mail på bx.psu.edu
Vahid JaliliComputational Scientist II, Broad Institute of MIT and HarvardVerificeret mail på broad.mit.edu
Aysam Guerlerwww.guerler.orgVerificeret mail på guerler.org
Martin ČechPenn StateVerificeret mail på bx.psu.edu
Yu ZhangAssociate Professor of Statistics, The Pennsylvania State UniversityVerificeret mail på psu.edu

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James Taylor

Professor of Biology and Computer Science, Johns Hopkins University

Verificeret mail på jhu.edu - Startside

Bioinformatics Computational Biology Genomics Machine Learning Chromatin Structure


Titel Sortér efter henvisninger Sortér efter årstal Sortér efter titel	Citeret af Citeret af	År
An integrated encyclopedia of DNA elements in the human genome ENCODE Project Consortium Nature 489 (7414), 57-74, 2012	17529	2012
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update E Afgan, D Baker, B Batut, M van den Beek, D Bouvier, M Čech, J Chilton, ... Nucleic acids research 46 (W1), W537-W544, 2018	6182	2018
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project E Birney, JA Stamatoyannopoulos, A Dutta, R Guigó, TR Gingeras, ... Nature 447 (7146), 799-816, 2007	6100	2007
Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences J Goecks, A Nekrutenko, J Taylor Genome Biol 11 (8), R86, 2010	4303	2010
Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution LDW Hillier, W Miller, E Birney, W Warren, RC Hardison, CP Ponting, ... Nature 432 (7018), 695-716, 2004	2962	2004
Galaxy: a platform for interactive large-scale genome analysis B Giardine, C Riemer, RC Hardison, R Burhans, L Elnitski, P Shah, ... Genome research 15 (10), 1451-1455, 2005	2651	2005
Genome sequence of the Brown Norway rat yields insights into mammalian evolution RA Gibbs, GM Weinstock, ML Metzker, DM Muzny, EJ Sodergren, ... Nature 428 (6982), 493-521, 2004	2552	2004
Initial sequence of the chimpanzee genome and comparison with the human genome TC Sequencing, Analysis Consortium Nature 437 (7055), 69-87, 2005	2314	2005
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update E Afgan, D Baker, M Van den Beek, D Blankenberg, D Bouvier, M Čech, ... Nucleic acids research 44 (W1), W3-W10, 2016	2185	2016
A comparative encyclopedia of DNA elements in the mouse genome F Yue, Y Cheng, A Breschi, J Vierstra, W Wu, T Ryba, R Sandstrom, Z Ma, ... Nature 515 (7527), 355-364, 2014	2016	2014
Galaxy: a web‐based genome analysis tool for experimentalists D Blankenberg, GV Kuster, N Coraor, G Ananda, R Lazarus, M Mangan, ... Current protocols in molecular biology 89 (1), 19.10. 1-19.10. 21, 2010	1831	2010
MetaWRAP—a flexible pipeline for genome-resolved metagenomic data analysis GV Uritskiy, J DiRuggiero, J Taylor Microbiome 6 (1), 158, 2018	1658	2018
Architectural protein subclasses shape 3D organization of genomes during lineage commitment JE Phillips-Cremins, MEG Sauria, A Sanyal, TI Gerasimova, BR Lajoie, ... Cell 153 (6), 1281-1295, 2013	1313	2013
Bioconda: a sustainable and comprehensive software distribution for the life sciences R Dale, B Grüning, A Sjödin, J Rowe, BA Chapman, CH Tomkins-Tinch, ... bioRxiv, 207092, 2017	1247*	2017
Topologically associating domains are stable units of replication-timing regulation BD Pope, T Ryba, V Dileep, F Yue, W Wu, O Denas, DL Vera, Y Wang, ... Nature 515 (7527), 402-405, 2014	985	2014
Ten Simple Rules for Reproducible Computational Research GK Sandve, A Nekrutenko, J Taylor, E Hovig PLOS Computational Biology 9 (10), e1003285, 2013	864	2013
Manipulation of FASTQ data with Galaxy D Blankenberg, A Gordon, G Von Kuster, N Coraor, J Taylor, ... Bioinformatics 26 (14), 1783-1785, 2010	831	2010
Genome analysis of the platypus reveals unique signatures of evolution WC Warren, LDW Hillier, JAM Graves, E Birney, CP Ponting, F Grützner, ... Nature 453 (7192), 175-183, 2008	777	2008
An encyclopedia of mouse DNA elements (Mouse ENCODE) JA Stamatoyannopoulos, M Snyder, R Hardison, B Ren, T Gingeras, ... Genome biology 13 (8), 418, 2012	379	2012
Next-generation sequencing data interpretation: enhancing reproducibility and accessibility A Nekrutenko, J Taylor Nature Reviews Genetics 13 (9), 667-672, 2012	373	2012

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