Giovanni Bussi

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michele parrinelloDepartment of ChemistryVerificeret mail på phys.chem.ethz.ch
Elisa MOLINARIUniversity of Modena and Reggio Emilia & CNR-Nano, Modena, ItalyVerificeret mail på unimore.it
Alice RUINIDipartimento di Scienze Fisiche, Informatiche e Matematiche, Universita' degli Studi di Modena e Reggio EmiliaVerificeret mail på unimore.it
Davide BranduardiComputational Chemistry & Informatics Group at AstexVerificeret mail på astx.com
Massimiliano BonomiInstitut Pasteur, CNRSVerificeret mail på pasteur.fr
Pavel BanášCzech Advanced Technology and Research Institute CATRIN, Palacky University OlomoucVerificeret mail på upol.cz
Davide DonadioUniversity of California DavisVerificeret mail på ucdavis.edu
Michal OtyepkaCATRIN, Palacký University; IT4Innovations, VŠB Technical University of OstravaVerificeret mail på upol.cz
Alessandro LaioSISSAVerificeret mail på sissa.it
Marilia Junqueira CaldasUniversity of São PauloVerificeret mail på usp.br
Mattia BernettiUniUrbVerificeret mail på uniurb.it
Vojtech MlynskyInstitute of Biophysics of the Czech Academy of Sciences, Brno, Czech RepublicVerificeret mail på ibp.cz
Petra KührováRegional Center of Advanced Technologies and Materials, The Czech Advanced Technology and ResearchVerificeret mail på upol.cz
Professor Paolo Raiteri, PhDCurtin UniversityVerificeret mail på curtin.edu.au
Alessandro BarducciCentre de Biologie Structurale (CBS), Montpellier, FranceVerificeret mail på cbs.cnrs.fr
Carlo CamilloniUniversity of MilanoVerificeret mail på unimi.it
Alejandro Gil-LeyMetaphore BiotechnologiesVerificeret mail på metaphorebio.com
Giovanni PinamontiFreie Universität, BerlinVerificeret mail på fu-berlin.de
Michele CeriottiAssociate Professor at EPFL, Institute of MaterialsVerificeret mail på epfl.ch
Gareth TribelloSchool of Maths and Physics, Queen's University BelfastVerificeret mail på qub.ac.uk

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Giovanni Bussi

Scuola Internazionale Superiore di Studi Avanzati, Trieste, Italy

Verificeret mail på sissa.it - Startside

Biophysics RNA computational physics free-energy calculations molecular dynamics


Titel Sortér efter henvisninger Sortér efter årstal Sortér efter titel	Citeret af Citeret af	År
Canonical sampling through velocity rescaling G Bussi, D Donadio, M Parrinello Journal of Chemical Physics 126, 014101, 2007	16398	2007
PLUMED 2: New feathers for an old bird GA Tribello, M Bonomi, D Branduardi, C Camilloni, G Bussi Computer Physics Communications 185 (2), 604-613, 2014	3173	2014
Well-tempered metadynamics: a smoothly converging and tunable free-energy method A Barducci, G Bussi, M Parrinello Physical review letters 100 (2), 020603, 2008	3047	2008
PLUMED: A portable plugin for free-energy calculations with molecular dynamics M Bonomi, D Branduardi, G Bussi, C Camilloni, D Provasi, P Raiteri, ... Computer Physics Communications 180 (10), 1961-1972, 2009	1874	2009
Promoting transparency and reproducibility in enhanced molecular simulations M Bonomi, G Bussi, C Camilloni, GA Tribello, P Banáš, A Barducci, ... Nature methods 16 (8), 670-673, 2019	822	2019
Free-energy landscape for β hairpin folding from combined parallel tempering and metadynamics G Bussi, FL Gervasio, A Laio, M Parrinello Journal of the American Chemical Society 128 (41), 13435-13441, 2006	591	2006
Using metadynamics to explore complex free-energy landscapes G Bussi, A Laio Nature Reviews Physics 2, 200–212, 2020	586	2020
Equilibrium free energies from nonequilibrium metadynamics G Bussi, A Laio, M Parrinello Physical review letters 96 (9), 090601, 2006	534	2006
Enhanced sampling in molecular dynamics using metadynamics, replica-exchange, and temperature-acceleration C Abrams, G Bussi Entropy 16 (1), 163-199, 2014	502	2014
Accurate sampling using Langevin dynamics G Bussi, M Parrinello Physical Review E—Statistical, Nonlinear, and Soft Matter Physics 75 (5 …, 2007	451	2007
Isothermal-isobaric molecular dynamics using stochastic velocity rescaling G Bussi, T Zykova-Timan, M Parrinello The Journal of chemical physics 130 (7), 074101, 2009	443	2009
Excitons in carbon nanotubes: An ab initio symmetry-based approach E Chang, G Bussi, A Ruini, E Molinari Physical review letters 92 (19), 196401, 2004	361	2004
Colored-noise thermostats à la carte M Ceriotti, G Bussi, M Parrinello Journal of Chemical Theory and Computation 6 (4), 1170-1180, 2010	330	2010
Metadynamics with adaptive Gaussians D Branduardi, G Bussi, M Parrinello Journal of chemical theory and computation 8 (7), 2247-2254, 2012	315	2012
Pressure control using stochastic cell rescaling M Bernetti, G Bussi The Journal of Chemical Physics 153 (11), 114107, 2020	306	2020
RNA structural dynamics as captured by molecular simulations: a comprehensive overview J Šponer, G Bussi, M Krepl, P Banáš, S Bottaro, RA Cunha, A Gil-Ley, ... Chemical reviews 118 (8), 4177-4338, 2018	303	2018
Nuclear quantum effects in solids using a colored-noise thermostat M Ceriotti, G Bussi, M Parrinello Physical review letters 103 (3), 030603, 2009	293	2009
Hamiltonian replica exchange in GROMACS: a flexible implementation G Bussi Molecular Physics 112 (3-4), 379-384, 2014	275	2014
Langevin equation with colored noise for constant-temperature molecular dynamics simulations M Ceriotti, G Bussi, M Parrinello Physical review letters 102 (2), 20601, 2009	258	2009
Solid state effects on exciton states and optical properties of PPV A Ruini, MJ Caldas, G Bussi, E Molinari Physical review letters 88 (20), 206403, 2002	212	2002

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