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Francisco M Couto
Francisco M Couto
LASIGE, Departamento de Informática, Faculdade de Ciências, Universidade de Lisboa, Portugal
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Semantic similarity in biomedical ontologies
C Pesquita, D Faria, AO Falcao, P Lord, FM Couto
PLoS computational biology 5 (7), e1000443, 2009
9622009
Metrics for GO based protein semantic similarity: a systematic evaluation
C Pesquita, D Faria, H Bastos, AEN Ferreira, AO Falcão, FM Couto
BMC bioinformatics 9, 1-16, 2008
4342008
The agreementmakerlight ontology matching system
D Faria, C Pesquita, E Santos, M Palmonari, IF Cruz, FM Couto
On the Move to Meaningful Internet Systems: OTM 2013 Conferences …, 2013
4102013
The CHEMDNER corpus of chemicals and drugs and its annotation principles
M Krallinger, O Rabal, F Leitner, M Vazquez, D Salgado, Z Lu, R Leaman, ...
Journal of cheminformatics 7, 1-17, 2015
3792015
Measuring semantic similarity between Gene Ontology terms
FM Couto, MJ Silva, PM Coutinho
Data & knowledge engineering 61 (1), 137-152, 2007
2912007
Facts from text—is text mining ready to deliver?
D Rebholz-Schuhmann, H Kirsch, F Couto
PLoS Biol 3 (2), e65, 2005
1892005
Evaluating gobased semantic similarity measures
C Pesquita, D Faria, H Bastos, A Falcão, F Couto
Proc. 10th Annual Bio-Ontologies Meeting 2007, 37-40, 2007
1542007
Semantic similarity over the gene ontology: family correlation and selecting disjunctive ancestors
FM Couto, MJ Silva, PM Coutinho
Proceedings of the 14th ACM international conference on Information and …, 2005
1542005
Identifying disease genes using machine learning and gene functional similarities, assessed through Gene Ontology
M Asif, HF Martiniano, AM Vicente, FM Couto
PloS one 13 (12), e0208626, 2018
1052018
Ontology alignment repair through modularization and confidence-based heuristics
E Santos, D Faria, C Pesquita, FM Couto
PloS one 10 (12), e0144807, 2015
992015
Automatic concept recognition using the human phenotype ontology reference and test suite corpora
T Groza, S Köhler, S Doelken, N Collier, A Oellrich, D Smedley, FM Couto, ...
Database 2015, bav005, 2015
862015
Disjunctive shared information between ontology concepts: application to Gene Ontology
FM Couto, MJ Silva
Journal of biomedical semantics 2, 1-16, 2011
862011
To repair or not to repair: reconciling correctness and coherence in ontology reference alignments
C Pesquita, D Faria, E Santos, FM Couto
Proc. 8th ISWC ontology matching workshop (OM), Sydney (AU), page this volume 3, 2013
852013
The semantic web in translational medicine: current applications and future directions
CM Machado, D Rebholz-Schuhmann, AT Freitas, FM Couto
Briefings in bioinformatics 16 (1), 89-103, 2015
822015
Finding genomic ontology terms in text using evidence content
F Couto, M Silva, P Coutinho
BMC bioinformatics 6 (Suppl 1), S21, 2005
812005
GOAnnotator: linking protein GO annotations to evidence text
F Couto, M Silva, V Lee, E Dimmer, E Camon, R Apweiler, H Kirsch, ...
Journal of Biomedical Discovery and Collaboration 1 (1), 19, 2006
802006
AgreementMakerLight results for OAEI 2013.
D Faria, C Pesquita, E Santos, IF Cruz, FM Couto
OM, 101-108, 2013
772013
CESSM: collaborative evaluation of semantic similarity measures
C Pesquita, D Pessoa, D Faria, F Couto
JB2009: challenges in bioinformatics 157, 190, 2009
772009
BO-LSTM: classifying relations via long short-term memory networks along biomedical ontologies
A Lamurias, D Sousa, LA Clarke, FM Couto
BMC bioinformatics 20, 1-12, 2019
762019
Using AgreementMaker to align ontologies for OAEI 2011
IF Cruz, C Stroe, F Caimi, A Fabiani, C Pesquita, FM Couto, M Palmonari
ISWC international workshop on ontology matching (OM) 814, 114-121, 2011
722011
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Artikler 1–20