| Cell-type-specific signaling networks in heterocellular organoids X Qin, J Sufi, P Vlckova, P Kyriakidou, SE Acton, VSW Li, M Nitz, CJ Tape Nature methods 17 (3), 335-342, 2020 | 123 | 2020 |
| Crosstalk with lung epithelial cells regulates Sfrp2-mediated latency in breast cancer dissemination M Montagner, R Bhome, S Hooper, P Chakravarty, X Qin, J Sufi, ... Nature Cell Biology 22 (3), 289-296, 2020 | 98 | 2020 |
| ASPP2 links the apical lateral polarity complex to the regulation of YAP activity in epithelial cells C Royer, S Koch, X Qin, J Zak, L Buti, E Dudziec, S Zhong, I Ratnayaka, ... PloS one 9 (10), e111384, 2014 | 48 | 2014 |
| An oncogenic phenoscape of colonic stem cell polarization X Qin, FC Rodriguez, J Sufi, P Vlckova, J Claus, CJ Tape Cell 186 (25), 5554-5568. e18, 2023 | 44 | 2023 |
| A formalized design process for bacterial consortia that perform logic computing W Ji, H Shi, H Zhang, R Sun, J Xi, D Wen, J Feng, Y Chen, X Qin, Y Ma, ... PLoS One 8 (2), e57482, 2013 | 38 | 2013 |
| Multiplexed single-cell analysis of organoid signaling networks J Sufi, X Qin, FC Rodriguez, YJ Bu, P Vlckova, MR Zapatero, M Nitz, ... Nature protocols 16 (10), 4897-4918, 2021 | 36 | 2021 |
| Trellis tree-based analysis reveals stromal regulation of patient-derived organoid drug responses MR Zapatero, A Tong, JW Opzoomer, R O’Sullivan, FC Rodriguez, J Sufi, ... Cell 186 (25), 5606-5619. e24, 2023 | 33 | 2023 |
| Deciphering organoids: high-dimensional analysis of biomimetic cultures X Qin, CJ Tape Trends in Biotechnology 39 (8), 774-787, 2021 | 23 | 2021 |
| Detecting temporal shape changes with the euler characteristic transform L Marsh, FY Zhou, X Qin, X Lu, HM Byrne, HA Harrington Transactions of Mathematics and Its Applications 8 (2), tnae002, 2024 | 15 | 2024 |
| A single-cell perturbation landscape of colonic stem cell polarisation X Qin, FC Rodriguez, J Sufi, P Vlckova, J Claus, CJ Tape bioRxiv, 2023.02. 15.528008, 2023 | 7 | 2023 |
| Functional analysis of cell plasticity using single-cell technologies X Qin, CJ Tape Trends in Cell Biology 34 (10), 854-864, 2024 | 5 | 2024 |
| Oncogenic PIK3CA corrupts growth factor signaling specificity RR Madsen, A Le Marois, ON Mruk, M Voliotis, S Yin, J Sufi, X Qin, ... Molecular Systems Biology, 1-32, 2024 | 3 | 2024 |
| Trellis single-cell screening reveals stromal regulation of patient-derived organoid drug responses MR Zapatero, A Tong, J Sufi, P Vlckova, FC Rodriguez, C Nattress, X Qin, ... bioRxiv, 2022.10. 19.512668, 2022 | 3 | 2022 |
| Long-term in vitro expansion of a human fetal pancreas stem cell that generates all three pancreatic cell lineages A Andersson-Rolf, K Groot, J Korving, H Begthel, MAJ Hanegraaf, ... Cell 187 (26), 7394-7413. e22, 2024 | 1 | 2024 |
| SIGNAL-seq: Multimodal Single-cell Inter-and Intra-cellular Signalling Analysis JW Opzoomer, R O’Sullivan, J Sufi, R Madsen, X Qin, E Basiarz, CJ Tape bioRxiv, 2024.02. 23.581433, 2024 | 1 | 2024 |
| 692 A NOVEL AUTOPHAGY-DEFECTIVE IBD ORGANOID MODEL REVEALS INCREASED APOPTOSIS AND ALTERED PANETH CELL SIGNALLING IN RESPONSE TO TNF-ALPHA AND BACTERIAL LIGAND STIMULATION … G Sebepos-Rogers, J Sufi, X Qin, P Vlckova, D Sanders, C Murray, ... Gastroenterology 166 (5), S-160-S-161, 2024 | | 2024 |
| 41P Single-cell signalling analysis of engineered γδ T cell biotherapeutics for the treatment of colorectal cancer CB Nattress, P Vlckova, D Fowler, J Sufi, MR Zapatero, FC Rodriguez, ... Immuno-Oncology and Technology 16, 2022 | | 2022 |
| Mass Cytometry for Multivariate Organoid Signalling Analysis X Qin, J Sufi, P Vlckova, P Kyriakidou, SE Acton, VSW Li, M Nitz, CJ Tape | | 2020 |
