| deepTools2: a next generation web server for deep-sequencing data analysis F Ramírez, DP Ryan, B Grüning, V Bhardwaj, F Kilpert, AS Richter, ... Nucleic acids research 44 (Web Server issue), W160, 2016 | 6447 | 2016 |
| Paternal diet defines offspring chromatin state and intergenerational obesity A Öst, A Lempradl, E Casas, M Weigert, T Tiko, M Deniz, L Pantano, ... Cell 159 (6), 1352-1364, 2014 | 438 | 2014 |
| Freiburg RNA Tools: a web server integrating IntaRNA, ExpaRNA and LocARNA C Smith, S Heyne, AS Richter, S Will, R Backofen Nucleic acids research 38 (suppl_2), W373-W377, 2010 | 246 | 2010 |
| Trim28 haploinsufficiency triggers bi-stable epigenetic obesity K Dalgaard, K Landgraf, S Heyne, A Lempradl, J Longinotto, K Gossens, ... Cell 164 (3), 353-364, 2016 | 226 | 2016 |
| snakePipes: facilitating flexible, scalable and integrative epigenomic analysis V Bhardwaj, S Heyne, K Sikora, L Rabbani, M Rauer, F Kilpert, AS Richter, ... Bioinformatics 35 (22), 4757-4759, 2019 | 147 | 2019 |
| Freiburg RNA tools: a central online resource for RNA-focused research and teaching M Raden, SM Ali, OS Alkhnbashi, A Busch, F Costa, JA Davis, ... Nucleic acids research 46 (W1), W25-W29, 2018 | 145 | 2018 |
| The Polycomb-Dependent Epigenome Controls β Cell Dysfunction, Dedifferentiation, and Diabetes L TT, H S, D E, C E, L L, B T, Y CH, Sagar, A L, D K, T R, E L, S M, R M, ... Cell Metabolism 27 (6), 1294-1308, 2018 | 144 | 2018 |
| deepTools2: a next generation web server for deep-sequencing data analysis F Ramırez, DP Ryan, B Grüning, V Bhardwaj, F Kilpert, AS Richter, ... Nucleic Acids Res 44 (W1), W160-W165, 2016 | 118 | 2016 |
| GraphClust: alignment-free structural clustering of local RNA secondary structures S Heyne, F Costa, D Rose, R Backofen Bioinformatics 28 (12), i224-i232, 2012 | 111 | 2012 |
| Lightweight comparison of RNAs based on exact sequence–structure matches S Heyne, S Will, M Beckstette, R Backofen Bioinformatics 25 (16), 2095-2102, 2009 | 41 | 2009 |
| CRUP: a comprehensive framework to predict condition-specific regulatory units A Ramisch, V Heinrich, LV Glaser, A Fuchs, X Yang, P Benner, ... Genome biology 20, 1-23, 2019 | 31 | 2019 |
| Independent phenotypic plasticity axes define distinct obesity sub-types CH Yang, L Fagnocchi, S Apostle, V Wegert, S Casaní-Galdón, ... Nature metabolism 4 (9), 1150-1165, 2022 | 29 | 2022 |
| Epigenetic dosage identifies two major and functionally distinct β cell subtypes E Dror, L Fagnocchi, V Wegert, S Apostle, B Grimaldi, T Gruber, I Panzeri, ... Cell Metabolism 35 (5), 821-836. e7, 2023 | 27 | 2023 |
| LocARNAscan: Incorporating thermodynamic stability in sequence and structure-based RNA homology search. S Will, MF Siebauer, S Heyne, J Engelhardt, PF Stadler, K Reiche, ... Algorithms for Molecular Biology 8 (1), 14, 2013 | 21 | 2013 |
| Empowering the annotation and discovery of structured RNAs with scalable and accessible integrative clustering M Miladi, E Sokhoyan, T Houwaart, S Heyne, F Costa, B Grüning, ... bioRxiv, 550335, 2019 | 18* | 2019 |
| ExpaRNA-P: simultaneous exact pattern matching and folding of RNAs C Otto, M Möhl, S Heyne, M Amit, GM Landau, R Backofen, S Will BMC bioinformatics 15 (1), 404, 2014 | 17 | 2014 |
| Activation of a GPCR leads to eIF4G phosphorylation at the 5′ cap and to IRES-dependent translation K Leon, T Boulo, A Musnier, J Morales, C Gauthier, L Dupuy, S Heyne, ... Journal of Molecular Endocrinology 52 (3), 373-382, 2014 | 14 | 2014 |
| Local exact pattern matching for non-fixed RNA structures M Amit, R Backofen, S Heyne, GM Landau, M Möhl, C Otto, S Will IEEE/ACM transactions on computational biology and bioinformatics 11 (1 …, 2014 | 11 | 2014 |
| Navigating the unexplored seascape of pre-miRNA candidates in single-genome approaches ND Mendes, S Heyne, AT Freitas, MF Sagot, R Backofen Bioinformatics 28 (23), 3034-3041, 2012 | 10 | 2012 |
| Exact pattern matching for RNA structure ensembles C Schmiedl, M Möhl, S Heyne, M Amit, GM Landau, S Will, R Backofen Annual International Conference on Research in Computational Molecular …, 2012 | 6 | 2012 |
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