Nathan Baker

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Prof. J. Andrew McCammonUniversity of California, San DiegoVerificeret mail på ucsd.edu
Michael HolstProfessor of Mathematics and Physics, UC San DiegoVerificeret mail på ucsd.edu
David SeptUniversity of MichiganVerificeret mail på umich.edu
Jens Erik NielsenSenior Vice President, Enzyme, Protein and Strain Engineering Research, NovonesisVerificeret mail på novozymes.com
Dennis G. ThomasPacific Northwest National LaboratoryVerificeret mail på pnnl.gov
Simpson JosephProfessor of Chemistry & Biochemistry, UC San DiegoVerificeret mail på ucsd.edu
Guo-Wei WeiMSU Foundation Professor, Mathematics, Biochemistry & Molecular Biology, Electrical & ComputerVerificeret mail på msu.edu
Elizabeth JurrusBoeing, Defense, Space & SecurityVerificeret mail på pnnl.gov
Paul SchlesingerAssociate Professor Washington UniversityVerificeret mail på wustl.edu
Brett OlsenWashington University in St. LouisVerificeret mail på go.wustl.edu
Huan LeiMichigan State UniversityVerificeret mail på msu.edu
Yuhua SongThe University of Alabama at BirminghamVerificeret mail på uab.edu
Jason WagonerJunior Laufer FellowVerificeret mail på stonybrook.edu
David GoharaDirector of Research Computing, Saint Louis UniversityVerificeret mail på slu.edu
Lisa FelbergGraduate Student, University of California, BerkeleyVerificeret mail på berkeley.edu
Teresa Head-GordonUC BerkeleyVerificeret mail på berkeley.edu
Keith StarPacific Northwest National LaboratoryVerificeret mail på pnnl.gov
Chandrajit BajajComputational Applied Mathematics Chair, Professor of Computer Science,Verificeret mail på cs.utexas.edu
Alexey OnufrievVirginia TechVerificeret mail på vt.edu
Lois PollackProfessor of Applied and Engineering Physics, Cornell UniversityVerificeret mail på cornell.edu

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Nathan Baker

Microsoft

Verificeret mail på microsoft.com - Startside

Applied mathematics biophysics informatics computational biology chemistry


Titel Sortér efter henvisninger Sortér efter årstal Sortér efter titel	Citeret af Citeret af	År
Electrostatics of nanosystems: application to microtubules and the ribosome NA Baker, D Sept, S Joseph, MJ Holst, JA McCammon Proceedings of the National Academy of Sciences 98 (18), 10037-10041, 2001	8236	2001
PDB2PQR: an automated pipeline for the setup of Poisson–Boltzmann electrostatics calculations TJ Dolinsky, JE Nielsen, JA McCammon, NA Baker Nucleic acids research 32 (suppl_2), W665-W667, 2004	3826	2004
PDB2PQR: expanding and upgrading automated preparation of biomolecular structures for molecular simulations TJ Dolinsky, P Czodrowski, H Li, JE Nielsen, JH Jensen, G Klebe, ... Nucleic acids research 35 (suppl_2), W522-W525, 2007	2114	2007
Improvements to the APBS biomolecular solvation software suite E Jurrus, D Engel, K Star, K Monson, J Brandi, LE Felberg, DH Brookes, ... Protein Science 27 (1), 112-128, 2018	1948	2018
Improving implicit solvent simulations: a Poisson-centric view NA Baker Current opinion in structural biology 15 (2), 137-143, 2005	457	2005
Adaptive multilevel finite element solution of the Poisson–Boltzmann equation I. Algorithms and examples M Holst, N Baker, F Wang Journal of computational chemistry 21 (15), 1319-1342, 2000	383	2000
Assessing implicit models for nonpolar mean solvation forces: the importance of dispersion and volume terms JA Wagoner, NA Baker Proceedings of the National Academy of Sciences 103 (22), 8331-8336, 2006	358	2006
Web servers and services for electrostatics calculations with APBS and PDB2PQR S Unni, Y Huang, RM Hanson, M Tobias, S Krishnan, WW Li, JE Nielsen, ... Journal of Computational Chemistry 32 (7), 1488-1491, 2011	300	2011
Progress in the prediction of pK_a values in proteins E Alexov, EL Mehler, N Baker, A M. Baptista, Y Huang, F Milletti, ... Proteins: structure, function, and bioinformatics 79 (12), 3260-3275, 2011	289	2011
Chemception: a deep neural network with minimal chemistry knowledge matches the performance of expert-developed QSAR/QSPR models GB Goh, C Siegel, A Vishnu, NO Hodas, N Baker arXiv preprint arXiv:1706.06689, 2017	279	2017
Poisson–Boltzmann methods for biomolecular electrostatics NA Baker Methods in enzymology 383, 94-118, 2004	274	2004
Adaptive multilevel finite element solution of the Poisson–Boltzmann equation II. Refinement at solvent‐accessible surfaces in biomolecular systems N Baker, M Holst, F Wang Journal of computational chemistry 21 (15), 1343-1352, 2000	267	2000
Biomolecular electrostatics and solvation: a computational perspective P Ren, J Chun, DG Thomas, MJ Schnieders, M Marucho, J Zhang, ... Quarterly reviews of biophysics 45 (4), 427-491, 2012	221	2012
The physical basis of microtubule structure and stability D Sept, NA Baker, JA McCammon Protein Science 12 (10), 2257-2261, 2003	187	2003
Data-driven parameterization of the generalized Langevin equation H Lei, NA Baker, X Li Proceedings of the National Academy of Sciences 113 (50), 14183-14188, 2016	165	2016
The adaptive multilevel finite element solution of the Poisson-Boltzmann equation on massively parallel computers NA Baker, D Sept, MJ Holst, JA McCammon IBM Journal of Research and Development 45 (3.4), 427-438, 2001	162	2001
NanoParticle Ontology for cancer nanotechnology research DG Thomas, RV Pappu, NA Baker Journal of Biomedical Informatics 44 (1), 59-74, 2010	159	2010
Workshop report on basic research needs for scientific machine learning: Core technologies for artificial intelligence N Baker, F Alexander, T Bremer, A Hagberg, Y Kevrekidis, H Najm, ... USDOE Office of Science (SC), Washington, DC (United States), 2019	156	2019
A multiscale model linking ion-channel molecular dynamics and electrostatics to the cardiac action potential JR Silva, H Pan, D Wu, A Nekouzadeh, KF Decker, J Cui, NA Baker, ... Proceedings of the National Academy of Sciences 106 (27), 11102-11106, 2009	156	2009
Differential geometry based solvation model I: Eulerian formulation Z Chen, NA Baker, GW Wei Journal of computational physics 229 (22), 8231-8258, 2010	155	2010

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