| Roary: rapid large-scale prokaryote pan genome analysis AJ Page, CA Cummins, M Hunt, VK Wong, S Reuter, MTG Holden, ... Bioinformatics 31 (22), 3691-3693, 2015 | 4806 | 2015 |
| Epidemic of carbapenem-resistant Klebsiella pneumoniae in Europe is driven by nosocomial spread S David, S Reuter, SR Harris, C Glasner, T Feltwell, S Argimon, ... Nature microbiology, 1, 2019 | 663 | 2019 |
| Rapid bacterial whole-genome sequencing to enhance diagnostic and public health microbiology S Reuter, MJ Ellington, EJP Cartwright, CU Köser, ME Török, T Gouliouris, ... JAMA internal medicine 173 (15), 2013 | 233 | 2013 |
| More than 18,000 effectors in the Legionella genus genome provide multiple, independent combinations for replication in human cells L Gomez-Valero, C Rusniok, D Carson, S Mondino, AE Pérez-Cobas, ... Proceedings of the National Academy of Sciences 116 (6), 2265-2273, 2019 | 227 | 2019 |
| Parallel independent evolution of pathogenicity within the genus Yersinia S Reuter, TR Connor, L Barquist, D Walker, T Feltwell, SR Harris, ... Proceedings of the National Academy of Sciences 111 (18), 6768-6773, 2014 | 209 | 2014 |
| 'Add, stir and reduce': Yersinia spp. as model bacteria for pathogen evolution A McNally, NR Thomson, S Reuter, BW Wren Nature Reviews Microbiology 14 (3), 177-190, 2016 | 192 | 2016 |
| Clonal differences in Staphylococcus aureus bacteraemia-associated mortality M Recker, M Laabei, MS Toleman, S Reuter, RB Saunderson, B Blane, ... Nature Microbiology 2 (10), 1381, 2017 | 141 | 2017 |
| Integrated chromosomal and plasmid sequence analyses reveal diverse modes of carbapenemase gene spread among Klebsiella pneumoniae S David, V Cohen, S Reuter, AE Sheppard, T Giani, J Parkhill, ... Proceedings of the National Academy of Sciences 117 (40), 25043-25054, 2020 | 138 | 2020 |
| A pilot study of rapid whole-genome sequencing for the investigation of a Legionella outbreak S Reuter, TG Harrison, CU Köser, MJ Ellington, GP Smith, J Parkhill, ... BMJ open 3 (1), e002175, 2013 | 136 | 2013 |
| Longitudinal genomic surveillance of MRSA in the UK reveals transmission patterns in hospitals and the community F Coll, EM Harrison, MS Toleman, S Reuter, KE Raven, B Blane, ... Science translational medicine 9 (413), 2017 | 135 | 2017 |
| A decade of genomic history for healthcare-associated Enterococcus faecium in the United Kingdom and Ireland KE Raven, S Reuter, R Reynolds, HJ Brodrick, JE Russell, ME Török, ... Genome research 26 (10), 1388-1396, 2016 | 125 | 2016 |
| Early insights into the potential of the Oxford Nanopore MinION for the detection of antimicrobial resistance genes K Judge, SR Harris, S Reuter, J Parkhill, SJ Peacock Journal of Antimicrobial Chemotherapy 70 (10), 2775-2778, 2015 | 111 | 2015 |
| Whole genome sequencing of ESBL-producing Escherichia coli isolated from patients, farm waste and canals in Thailand C Runcharoen, KE Raven, S Reuter, T Kallonen, S Paksanont, ... Genome Medicine 9 (1), 81, 2017 | 110 | 2017 |
| Complex Routes of Nosocomial Vancomycin-Resistant Enterococcus faecium Transmission Revealed by Genome Sequencing KE Raven, T Gouliouris, H Brodrick, F Coll, NM Brown, R Reynolds, ... Clinical Infectious Diseases 64 (7), 886-893, 2017 | 97 | 2017 |
| Rapid whole-genome sequencing for investigation of a suspected tuberculosis outbreak ME Török, S Reuter, J Bryant, CU Köser, SV Stinchcombe, B Nazareth, ... Journal of clinical microbiology 51 (2), 611-614, 2013 | 87 | 2013 |
| Genome-based characterization of hospital-adapted Enterococcus faecalis lineages KE Raven, S Reuter, T Gouliouris, R Reynolds, JE Russell, NM Brown, ... Nature Microbiology 1, 2016 | 86 | 2016 |
| Rapid single-colony whole-genome sequencing of bacterial pathogens CU Köser, LJ Fraser, A Ioannou, J Becq, MJ Ellington, MTG Holden, ... Journal of Antimicrobial Chemotherapy 69 (5), 1275-1281, 2014 | 79 | 2014 |
| Whole-genome sequencing reveals transmission of vancomycin-resistant Enterococcus faecium in a healthcare network HJ Brodrick, KE Raven, EM Harrison, B Blane, S Reuter, ME Török, ... Genome medicine 8, 1-9, 2016 | 75 | 2016 |
| Building a genomic framework for prospective MRSA surveillance in the United Kingdom and the Republic of Ireland S Reuter, ME Török, MTG Holden, R Reynolds, KE Raven, B Blane, ... Genome research 26 (2), 263-270, 2016 | 74 | 2016 |
| Sharing of carbapenemase-encoding plasmids between Enterobacteriaceae in UK sewage uncovered by MinION sequencing C Ludden, S Reuter, K Judge, T Gouliouris, B Blane, F Coll, P Naydenova, ... Microbial Genomics, 2017 | 63 | 2017 |
Julian ParkhillUniversity of CambridgeVerificeret mail på cam.ac.uk
