| The ubiquitin ligase Stub1 negatively modulates regulatory T cell suppressive activity by promoting degradation of the transcription factor Foxp3 Z Chen, J Barbi, S Bu, HY Yang, Z Li, Y Gao, D Jinasena, J Fu, F Lin, ... Immunity 39 (2), 272-285, 2013 | 338 | 2013 |
| An Ovol2-Zeb1 mutual inhibitory circuit governs bidirectional and multi-step transition between epithelial and mesenchymal states T Hong, K Watanabe, CH Ta, A Villarreal-Ponce, Q Nie, X Dai PLoS computational biology 11 (11), e1004569, 2015 | 294 | 2015 |
| A mathematical model for the reciprocal differentiation of T helper 17 cells and induced regulatory T cells T Hong, J Xing, L Li, JJ Tyson PLoS computational biology 7 (7), e1002122, 2011 | 100 | 2011 |
| Exploring intermediate cell states through the lens of single cells AL MacLean, T Hong, Q Nie Current Opinion in Systems Biology 9, 32-41, 2018 | 86 | 2018 |
| A simple theoretical framework for understanding heterogeneous differentiation of CD4+ T cells T Hong, J Xing, L Li, JJ Tyson BMC systems biology 6, 1-17, 2012 | 81 | 2012 |
| Quantifying the landscape and kinetic paths for epithelial–mesenchymal transition from a core circuit C Li, T Hong, Q Nie Physical Chemistry Chemical Physics 18 (27), 17949-17956, 2016 | 60 | 2016 |
| Combinatorial perturbation analysis reveals divergent regulations of mesenchymal genes during epithelial-to-mesenchymal transition K Watanabe, N Panchy, S Noguchi, H Suzuki, T Hong NPJ systems biology and applications 5 (1), 21, 2019 | 56 | 2019 |
| Complete genome sequence of prepandemic Vibrio parahaemolyticus BB22OP RV Jensen, SM DePasquale, EA Harbolick, T Hong, AL Kernell, ... Genome announcements 1 (1), 10.1128/genomea. 00002-12, 2013 | 53 | 2013 |
| An enriched network motif family regulates multistep cell fate transitions with restricted reversibility Y Ye, X Kang, J Bailey, C Li, T Hong PLoS computational biology 15 (3), e1006855, 2019 | 49 | 2019 |
| MicroRNA filters Hox temporal transcription noise to confer boundary formation in the spinal cord CJ Li, T Hong, YT Tung, YP Yen, HC Hsu, YL Lu, M Chang, Q Nie, ... Nature Communications 8 (1), 14685, 2017 | 35 | 2017 |
| Integrative transcriptomic analysis reveals a multiphasic epithelial–mesenchymal spectrum in cancer and non-tumorigenic cells N Panchy, C Azeredo-Tseng, M Luo, N Randall, T Hong Frontiers in Oncology 9, 1479, 2020 | 29 | 2020 |
| Nonmodular oscillator and switch based on RNA decay drive regeneration of multimodal gene expression B Nordick, PY Yu, G Liao, T Hong Nucleic Acids Research 50 (7), 3693-3708, 2022 | 28 | 2022 |
| MicroRNAs govern bistable cell differentiation and lineage segregation via noncanonical feedback CJ Li, ES Liau, YH Lee, YZ Huang, Z Liu, A Willems, V Garside, E McGlinn, ... Molecular Systems Biology 17 (4), e9945, 2021 | 27 | 2021 |
| Multiple CheY homologs control swimming reversals and transient pauses in Azospirillum brasilense T Mukherjee, M Elmas, L Vo, V Alexiades, T Hong, G Alexandre Biophysical Journal 116 (8), 1527-1537, 2019 | 21 | 2019 |
| A Mathematical Framework for Understanding Four-Dimensional Heterogeneous Differentiation of CD4+ T Cells T Hong, C Oguz, JJ Tyson Bulletin of mathematical biology 77 (6), 1046-1064, 2015 | 21 | 2015 |
| Hili inhibits HIV replication in activated T cells BM Peterlin, P Liu, X Wang, D Cary, W Shao, M Leoz, T Hong, T Pan, ... Journal of virology 91 (11), 10.1128/jvi. 00237-17, 2017 | 18 | 2017 |
| Controlling stochasticity in epithelial-mesenchymal transition through multiple intermediate cellular states CH Ta, Q Nie, T Hong Discrete & Continuous Dynamical Systems-Series B 21 (7), 2016 | 18 | 2016 |
| Involvement of epithelial–mesenchymal transition genes in small cell lung cancer phenotypic plasticity SM Groves, N Panchy, DR Tyson, LA Harris, V Quaranta, T Hong Cancers 15 (5), 1477, 2023 | 12 | 2023 |
| Comparative single-cell transcriptomes of dose and time dependent epithelial-mesenchymal spectrums N Panchy, K Watanabe, M Takahashi, A Willems, T Hong NAR Genom. Bioinform. 4 (3), lqac072, 2022 | 12 | 2022 |
| Identification, visualization, statistical analysis and mathematical modeling of high-feedback loops in gene regulatory networks B Nordick, T Hong BMC bioinformatics 22, 1-21, 2021 | 12 | 2021 |
Qing NieUniversity of California, IrvineVerificeret mail på uci.edu
