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Jie Zheng
Jie Zheng
Associate Professor, School of Information Science and Technology, ShanghaiTech University
Verificeret mail på shanghaitech.edu.cn - Startside
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Drug-Target Interaction Prediction by Learning From Local Information and Neighbors
JP Mei, CK Kwoh, P Yang, XL Li, J Zheng
Bioinformatics 29 (2), 238-245, 2013
4202013
Improving compound–protein interaction prediction by building up highly credible negative samples
H Liu, J Sun, J Guan, J Zheng, S Zhou
Bioinformatics 31 (12), i221-i229, 2015
3072015
Assignment of orthologous genes via genome rearrangement
X Chen, J Zheng, Z Fu, P Nan, Y Zhong, S Lonardi, T Jiang
IEEE/ACM Transactions on Computational Biology and Bioinformatics 2 (4), 302-315, 2005
2052005
SynLethDB: synthetic lethality database toward discovery of selective and sensitive anticancer drug targets
J Guo, H Liu, J Zheng
Nucleic acids research 44 (D1), D1011-D1017, 2016
1562016
Minimum Common String Partition Problem: Hardness and Approximations
A Goldstein, P Kolman, J Zheng
The Electronic Journal of Combinatorics 12 (R50), 1-18, 2005
1382005
Oncogenic KRAS-associated gene signature defines co-targeting of CDK4/6 and MEK as a viable therapeutic strategy in colorectal cancer
M Pek, S Yatim, Y Chen, J Li, M Gong, X Jiang, F Zhang, J Zheng, X Wu, ...
Oncogene 36 (35), 4975-4986, 2017
862017
SimBoolNet—a Cytoscape plugin for dynamic simulation of signaling networks
J Zheng, D Zhang, PF Przytycki, R Zielinski, J Capala, TM Przytycka
Bioinformatics 26 (1), 141-142, 2010
822010
The crosstalk between EGF, IGF, and Insulin cell signaling pathways-computational and experimental analysis
R Zielinski, PF Przytycki, J Zheng, D Zhang, TM Przytycka, J Capala
BMC systems biology 3, 1-10, 2009
812009
Alternative splicing analysis in human monocytes and macrophages reveals MBNL1 as major regulator
H Liu, PA Lorenzini, F Zhang, S Xu, MSM Wong, J Zheng, X Roca
Nucleic Acids Research, 2018
662018
KG4SL: Knowledge Graph Neural Network for Synthetic Lethality Prediction in Human Cancers
S Wang, F Xu, Y Li, J Wang, K Zhang, Y Liu, M Wu, J Zheng
Bioinformatics (ISMB/ECCB 2021) 37 (Suppl 1), i418-i425, 2021
582021
Therapeutic targeting of the mitochondrial one-carbon pathway: perspectives, pitfalls, and potential
LN Zhao, M Björklund, MJ Caldez, J Zheng, P Kaldis
Oncogene 40 (13), 2339-2354, 2021
562021
Single-cell transcriptional analysis to uncover regulatory circuits driving cell fate decisions in early mouse development
H Chen, J Guo, SK Mishra, P Robson, M Niranjan, J Zheng
Bioinformatics 31 (7), 1060-1066, 2015
562015
The Max-Min High-Order Dynamic Bayesian Network for Learning Gene Regulatory Networks with Time-Delayed Regulations
Y Li, H Chen, J Zheng, A Ngom
IEEE/ACM Transactions on Computational Biology and Bioinformatics 13 (4 …, 2016
552016
SL 2 MF: Predicting Synthetic Lethality in Human Cancers via Logistic Matrix Factorization
Y Liu, M Wu, C Liu, X Li, J Zheng
IEEE/ACM Transactions on Computational Biology and Bioinformatics 17 (3 …, 2020
542020
Computing the assignment of orthologous genes via genome rearrangement
X Chen, J Zheng, Z Fu, P Nan, Y Zhong, S Lonardi, T Jiang
Proc. 3rd Asia Pacific Bioinformatics Conference (APBC 2005), 363-378, 2005
512005
Support for the Coelomata clade of animals from a rigorous analysis of the pattern of intron conservation
J Zheng, IB Rogozin, EV Koonin, TM Przytycka
Molecular Biology and Evolution 24 (11), 2583-2592, 2007
502007
Sequencing of 15 622 gene‐bearing BAC s clarifies the gene‐dense regions of the barley genome
M Muñoz‐Amatriaín, S Lonardi, MC Luo, K Madishetty, JT Svensson, ...
The Plant Journal 84 (1), 216-227, 2015
482015
Predicting antigenic variants of H1N1 influenza virus based on epidemics and pandemics using a stacking model
R Yin, VH Tran, X Zhou, J Zheng, CK Kwoh
PloS one 13 (12), e0207777, 2018
472018
SynLethDB 2.0: A web-based knowledge graph database on synthetic lethality for novel anticancer drug discovery
J Wang, M Wu, X Huang, L Wang, S Zhang, H Liu, J Zheng
Database 2022 (baac030), 2022
462022
In Silico Prediction of Synthetic Lethality by Meta-Analysis of Genetic Interactions, Functions, and Pathways in Yeast and Human Cancer
M Wu, X Li, F Zhang, X Li, CK Kwoh, J Zheng
Cancer informatics 13 (Suppl 3), 71 - 80, 2014
422014
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Artikler 1–20