| HOTAIR forms an intricate and modular secondary structure S Somarowthu, M Legiewicz, I Chillón, M Marcia, F Liu, AM Pyle Molecular cell 58 (2), 353-361, 2015 | 348 | 2015 |
| Visualizing the secondary and tertiary architectural domains of lncRNA RepA F Liu, S Somarowthu, AM Pyle Nature chemical biology 13 (3), 282-289, 2017 | 132 | 2017 |
| Native purification and analysis of long RNAs I Chillón, M Marcia, M Legiewicz, F Liu, S Somarowthu, AM Pyle Methods in enzymology 558, 3-37, 2015 | 71 | 2015 |
| High‐performance prediction of functional residues in proteins with machine learning and computed input features S Somarowthu, H Yang, DGC Hildebrand, MJ Ondrechen Biopolymers 95 (6), 390-400, 2011 | 61 | 2011 |
| Phylogenetic analysis with improved parameters reveals conservation in lncRNA structures RCA Tavares, AM Pyle, S Somarowthu Journal of molecular biology 431 (8), 1592-1603, 2019 | 60* | 2019 |
| Author Correction: Visualizing group II intron dynamics between the first and second steps of splicing J Manigrasso, I Chillón, V Genna, P Vidossich, S Somarowthu, AM Pyle, ... Nature communications 13 (1), 1, 2022 | 57 | 2022 |
| Now on display: a gallery of group II intron structures at different stages of catalysis M Marcia, S Somarowthu, AM Pyle Mobile DNA 4, 1-14, 2013 | 54 | 2013 |
| A tale of two isomerases: compact versus extended active sites in ketosteroid isomerase and phosphoglucose isomerase S Somarowthu, HR Brodkin, JA D’Aquino, D Ringe, MJ Ondrechen, ... Biochemistry 50 (43), 9283-9295, 2011 | 49 | 2011 |
| Visualizing group II intron dynamics between the first and second steps of splicing J Manigrasso, I Chillón, V Genna, P Vidossich, S Somarowthu, AM Pyle, ... Nature communications 11 (1), 2837, 2020 | 48 | 2020 |
| Replication protein A binds RNA and promotes R-loop formation OM Mazina, S Somarowthu, LY Kadyrova, AG Baranovskiy, TH Tahirov, ... Journal of Biological Chemistry 295 (41), 14203-14213, 2020 | 44 | 2020 |
| POOL server: machine learning application for functional site prediction in proteins S Somarowthu, MJ Ondrechen Bioinformatics 28 (15), 2078-2079, 2012 | 42 | 2012 |
| Xist attenuates acute inflammatory response by female cells BB Shenoda, S Ramanathan, R Gupta, Y Tian, R Jean-Toussaint, ... Cellular and Molecular Life Sciences 78, 299-316, 2021 | 35 | 2021 |
| Prediction of distal residue participation in enzyme catalysis HR Brodkin, NA DeLateur, S Somarowthu, CL Mills, WR Novak, ... Protein Science 24 (5), 762-778, 2015 | 35 | 2015 |
| Functional classification of protein 3D structures from predicted local interaction sites R Parasuram, JS Lee, P Yin, S Somarowthu, MJ Ondrechen Journal of bioinformatics and computational biology 8 (supp01), 1-15, 2010 | 27 | 2010 |
| Progress and current challenges in modeling large RNAs S Somarowthu Journal of molecular biology 428 (5), 736-747, 2016 | 26 | 2016 |
| Protein function annotation with structurally aligned local sites of activity (SALSAs) Z Wang, P Yin, JS Lee, R Parasuram, S Somarowthu, MJ Ondrechen BMC bioinformatics 14, 1-9, 2013 | 25 | 2013 |
| Solving nucleic acid structures by molecular replacement: examples from group II intron studies M Marcia, E Humphris-Narayanan, KS Keating, S Somarowthu, ... Biological Crystallography 69 (11), 2174-2185, 2013 | 22 | 2013 |
| Visualizing the ai5γ group IIB intron S Somarowthu, M Legiewicz, KS Keating, AM Pyle Nucleic acids research 42 (3), 1947-1958, 2014 | 21 | 2014 |
| Crystal structure of a metal‐dependent phosphoesterase (YP_910028.1) from Bifidobacterium adolescentis: Computational prediction and experimental validation … GW Han, J Ko, CL Farr, MC Deller, Q Xu, HJ Chiu, MD Miller, J Sefcikova, ... Proteins: Structure, Function, and Bioinformatics 79 (7), 2146-2160, 2011 | 16 | 2011 |
| Identifying structural domains and conserved regions in the long non-coding RNA lncTCF7 MC Owens, SC Clark, A Yankey, S Somarowthu International journal of molecular sciences 20 (19), 4770, 2019 | 14 | 2019 |
Mary Jo OndrechenNortheastern UniversityVerificeret mail på neu.edu