Interaction-site prediction for protein complexes: a critical assessment HX Zhou, S Qin Bioinformatics 23 (17), 2203-2209, 2007 | 227 | 2007 |
meta-PPISP: a meta web server for protein-protein interaction site prediction S Qin, HX Zhou Bioinformatics 23 (24), 3386-3387, 2007 | 208 | 2007 |
Prediction of homoprotein and heteroprotein complexes by protein docking and template‐based modeling: a CASP‐CAPRI experiment MF Lensink, S Velankar, A Kryshtafovych, SY Huang, ... Proteins: Structure, Function, and Bioinformatics 84, 323-348, 2016 | 168 | 2016 |
Community-wide assessment of protein-interface modeling suggests improvements to design methodology SJ Fleishman, TA Whitehead, EM Strauch, JE Corn, S Qin, HX Zhou, ... Journal of molecular biology 414 (2), 289-302, 2011 | 158 | 2011 |
Why do disordered and structured proteins behave differently in phase separation? HX Zhou, V Nguemaha, K Mazarakos, S Qin Trends in biochemical sciences 43 (7), 499-516, 2018 | 150 | 2018 |
Effect of macromolecular crowding on protein binding stability: modest stabilization and significant biological consequences J Batra, K Xu, S Qin, HX Zhou Biophysical Journal 97 (3), 906-911, 2009 | 134 | 2009 |
Atomistic modeling of macromolecular crowding predicts modest increases in protein folding and binding stability S Qin, HX Zhou Biophysical Journal 97 (1), 12-19, 2009 | 129 | 2009 |
Automated prediction of protein association rate constants S Qin, X Pang, HX Zhou Structure 19 (12), 1744-1751, 2011 | 128 | 2011 |
Community‐wide evaluation of methods for predicting the effect of mutations on protein–protein interactions R Moretti, SJ Fleishman, R Agius, M Torchala, PA Bates, PL Kastritis, ... Proteins: Structure, Function, and Bioinformatics 81 (11), 1980-1987, 2013 | 114 | 2013 |
Effects of macromolecular crowding on protein conformational changes H Dong, S Qin, HX Zhou PLoS computational biology 6 (7), e1000833, 2010 | 111 | 2010 |
Intrinsically disordered protein exhibits both compaction and expansion under macromolecular crowding A Banks, S Qin, KL Weiss, CB Stanley, HX Zhou Biophysical journal 114 (5), 1067-1079, 2018 | 80 | 2018 |
Effects of macromolecular crowding on the conformational ensembles of disordered proteins S Qin, HX Zhou The journal of physical chemistry letters 4 (20), 3429-3434, 2013 | 70 | 2013 |
Blind prediction of interfacial water positions in CAPRI MF Lensink, IH Moal, PA Bates, PL Kastritis, ASJ Melquiond, E Karaca, ... Proteins: Structure, Function, and Bioinformatics 82 (4), 620-632, 2014 | 63 | 2014 |
Do electrostatic interactions destabilize protein–nucleic acid binding? S Qin, HX Zhou Biopolymers: Original Research on Biomolecules 86 (2), 112-118, 2007 | 54 | 2007 |
Protein folding, binding, and droplet formation in cell-like conditions S Qin, HX Zhou Current opinion in structural biology 43, 28-37, 2017 | 47 | 2017 |
Contrasting factors on the kinetic path to protein complex formation diminish the effects of crowding agents Y Phillip, M Harel, R Khait, S Qin, HX Zhou, G Schreiber Biophysical journal 103 (5), 1011-1019, 2012 | 47 | 2012 |
Fast method for computing chemical potentials and liquid–liquid phase equilibria of macromolecular solutions S Qin, HX Zhou The Journal of Physical Chemistry B 120 (33), 8164-8174, 2016 | 45 | 2016 |
Method to predict crowding effects by postprocessing molecular dynamics trajectories: application to the flap dynamics of HIV-1 protease S Qin, DDL Minh, JA McCammon, HX Zhou The journal of physical chemistry letters 1 (1), 107-110, 2010 | 44 | 2010 |
PI2PE: protein interface/interior prediction engine H Tjong, S Qin, HX Zhou Nucleic Acids Research 35 (suppl_2), W357-W362, 2007 | 39 | 2007 |
A holistic approach to protein docking S Qin, HX Zhou Proteins: Structure, Function, and Bioinformatics 69 (4), 743-749, 2007 | 37 | 2007 |