| ProteomeXchange provides globally coordinated proteomics data submission and dissemination JA Vizcaíno, EW Deutsch, R Wang, A Csordas, F Reisinger, D Ríos, ... Nature biotechnology 32 (3), 223-226, 2014 | 2810 | 2014 |
| The ProteomeXchange consortium in 2017: supporting the cultural change in proteomics public data deposition EW Deutsch, A Csordas, Z Sun, A Jarnuczak, Y Perez-Riverol, T Ternent, ... Nucleic acids research, gkw936, 2016 | 899 | 2016 |
| A guided tour of the Trans‐Proteomic Pipeline EW Deutsch, L Mendoza, D Shteynberg, T Farrah, H Lam, N Tasman, ... Proteomics 10 (6), 1150-1159, 2010 | 863 | 2010 |
| The ProteomeXchange consortium in 2020: enabling ‘big data’approaches in proteomics EW Deutsch, N Bandeira, V Sharma, Y Perez-Riverol, JJ Carver, ... Nucleic acids research 48 (D1), D1145-D1152, 2020 | 741 | 2020 |
| iProphet: multi-level integrative analysis of shotgun proteomic data improves peptide and protein identification rates and error estimates D Shteynberg, EW Deutsch, H Lam, JK Eng, Z Sun, N Tasman, ... Molecular & cellular proteomics 10 (12), M111. 007690, 2011 | 633 | 2011 |
| A high-confidence human plasma proteome reference set with estimated concentrations in PeptideAtlas T Farrah, EW Deutsch, GS Omenn, DS Campbell, Z Sun, JA Bletz, ... Molecular & cellular proteomics 10 (9), M110. 006353, 2011 | 509 | 2011 |
| The ProteomeXchange consortium at 10 years: 2023 update EW Deutsch, N Bandeira, Y Perez-Riverol, V Sharma, JJ Carver, ... Nucleic acids research 51 (D1), D1539-D1548, 2023 | 399 | 2023 |
| A complete mass-spectrometric map of the yeast proteome applied to quantitative trait analysis P Picotti, M Clément-Ziza, H Lam, DS Campbell, A Schmidt, EW Deutsch, ... Nature 494 (7436), 266-270, 2013 | 358 | 2013 |
| Trans‐Proteomic Pipeline, a standardized data processing pipeline for large‐scale reproducible proteomics informatics EW Deutsch, L Mendoza, D Shteynberg, J Slagel, Z Sun, RL Moritz PROTEOMICS–Clinical Applications 9 (7-8), 745-754, 2015 | 356 | 2015 |
| Human SRMAtlas: a resource of targeted assays to quantify the complete human proteome U Kusebauch, DS Campbell, EW Deutsch, CS Chu, DA Spicer, ... Cell 166 (3), 766-778, 2016 | 340 | 2016 |
| The human plasma proteome draft of 2017: building on the human plasma PeptideAtlas from mass spectrometry and complementary assays JM Schwenk, GS Omenn, Z Sun, DS Campbell, MS Baker, CM Overall, ... Journal of proteome research 16 (12), 4299-4310, 2017 | 245 | 2017 |
| PASSEL: The P eptide A tlas SRM experiment library T Farrah, EW Deutsch, R Kreisberg, Z Sun, DS Campbell, L Mendoza, ... Proteomics 12 (8), 1170-1175, 2012 | 238 | 2012 |
| The Mtb proteome library: a resource of assays to quantify the complete proteome of Mycobacterium tuberculosis OT Schubert, J Mouritsen, C Ludwig, HL Röst, G Rosenberger, PK Arthur, ... Cell host & microbe 13 (5), 602-612, 2013 | 214 | 2013 |
| Advances and utility of the human plasma proteome EW Deutsch, GS Omenn, Z Sun, M Maes, M Pernemalm, KK Palaniappan, ... Journal of proteome research 20 (12), 5241-5263, 2021 | 166 | 2021 |
| State of the human proteome in 2013 as viewed through PeptideAtlas: comparing the kidney, urine, and plasma proteomes for the biology-and disease-driven Human Proteome Project T Farrah, EW Deutsch, GS Omenn, Z Sun, JD Watts, T Yamamoto, ... Journal of proteome research 13 (1), 60-75, 2014 | 152 | 2014 |
| The state of the human proteome in 2012 as viewed through PeptideAtlas T Farrah, EW Deutsch, MR Hoopmann, JL Hallows, Z Sun, CY Huang, ... Journal of proteome research 12 (1), 162-171, 2013 | 139 | 2013 |
| PTMProphet: Fast and accurate mass modification localization for the trans-proteomic pipeline DD Shteynberg, EW Deutsch, DS Campbell, MR Hoopmann, ... Journal of proteome research 18 (12), 4262-4272, 2019 | 118 | 2019 |
| Evolutionary origins and interactomes of human, young microproteins and small peptides translated from short open reading frames CL Sandmann, JF Schulz, J Ruiz-Orera, M Kirchner, M Ziehm, E Adami, ... Molecular cell 83 (6), 994-1011. e18, 2023 | 83 | 2023 |
| Using PeptideAtlas, SRMAtlas, and PASSEL: comprehensive resources for discovery and targeted proteomics U Kusebauch, EW Deutsch, DS Campbell, Z Sun, T Farrah, RL Moritz Current protocols in bioinformatics 46 (1), 13.25. 1-13.25. 28, 2014 | 83 | 2014 |
| State of the human proteome in 2014/2015 as viewed through PeptideAtlas: enhancing accuracy and coverage through the AtlasProphet EW Deutsch, Z Sun, D Campbell, U Kusebauch, CS Chu, L Mendoza, ... Journal of proteome research 14 (9), 3461-3473, 2015 | 78 | 2015 |
