Remo Rohs

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Ana Carolina Dantas MachadoUniversity of California, San DiegoVerificeret mail på alumni.usc.edu
Tianyin ZhouGoogleVerificeret mail på usc.edu
Richard S. MannProfessor of Biochemistry, Neuroscience and Systems Biology, Zuckerman Mind Brain Behavior InstituteVerificeret mail på columbia.edu
Lin YangGoogleVerificeret mail på usc.edu
Barry HonigColumbia UniversityVerificeret mail på columbia.edu
Tsu-Pei ChiuAssistant Professor (Teaching), University of Southern CaliforniaVerificeret mail på usc.edu
Iris DrorUniversity of California, Los Angeles (UCLA)Verificeret mail på mednet.ucla.edu
Harmen J. BussemakerColumbia UniversityVerificeret mail på columbia.edu
Raluca GordanAssociate Professor, Duke UniversityVerificeret mail på duke.edu
Peng LiuScientist, Department of Biostatistics and Medical Informatics & Carbone Cancer Center, UW-MadisonVerificeret mail på wisc.edu
Beibei XinPhD, University of Southern CaliforniaVerificeret mail på usc.edu
Rosa Di FeliceUniversity of Southern California, Los Angeles USA and CNR-NANO-S3 Italy (on leave)Verificeret mail på usc.edu
Matthew SlatteryUniversity of Minnesota Medical SchoolVerificeret mail på umn.edu
Rohit JoshiCDFD-HyderabadVerificeret mail på cdfd.org.in
Satyanarayan RaoAssistant Professor, IIT RoorkeeVerificeret mail på bt.iitr.ac.in
Jinsen LiUniversity of Southern CaliforniaVerificeret mail på usc.edu
Lin ChenProfessor of Biological Sciences and Chemistry, University of Southern CaliforniaVerificeret mail på usc.edu
Peter Z. QinProfessor of Chemistry, University of Southern CaliforniaVerificeret mail på usc.edu
Todd R. RileyAssistant Professor, UMass BostonVerificeret mail på umb.edu
Ning ShenZhejiang UniversityVerificeret mail på zju.edu.cn

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Remo Rohs

Professor and Chair of Quantitative and Computational Biology, University of Southern California

Verificeret mail på usc.edu - Startside

Computational Biology Structural Biology Bioinformatics Machine Learning Drug Design


Titel Sortér efter henvisninger Sortér efter årstal Sortér efter titel	Citeret af Citeret af	År
The role of DNA shape in protein–DNA recognition R Rohs, SM West, A Sosinsky, P Liu, RS Mann, B Honig Nature 461 (7268), 1248-1253, 2009	1230	2009
Origins of specificity in protein-DNA recognition R Rohs, X Jin, SM West, R Joshi, B Honig, RS Mann Annual Review of Biochemistry 79, 233-269, 2010	1094	2010
Absence of a simple code: how transcription factors read the genome M Slattery, T Zhou, L Yang, AC Dantas Machado, R Gordân, R Rohs Trends in Biochemical Sciences 39 (9), 381-399, 2014	612	2014
Cofactor binding evokes latent differences in DNA binding specificity between Hox proteins M Slattery, T Riley, P Liu, N Abe, P Gomez-Alcala, I Dror, T Zhou, R Rohs, ... Cell 147 (6), 1270-1282, 2011	570	2011
Functional specificity of a Hox protein mediated by the recognition of minor groove structure R Joshi, JM Passner, R Rohs, R Jain, A Sosinsky, MA Crickmore, V Jacob, ... Cell 131 (3), 530-543, 2007	397	2007
Genomic regions flanking E-box binding sites influence DNA binding specificity of bHLH transcription factors through DNA shape R Gordân, N Shen, I Dror, T Zhou, J Horton, R Rohs, ML Bulyk Cell Reports 3 (4), 1093-1104, 2013	387	2013
DNAshape: a method for the high-throughput prediction of DNA structural features on a genomic scale T Zhou, L Yang, Y Lu, I Dror, AC Dantas Machado, T Ghane, R Di Felice, ... Nucleic Acids Research 41 (W1), W56-W62, 2013	345	2013
Molecular flexibility in ab initio drug docking to DNA: binding-site and binding-mode transitions in all-atom Monte Carlo simulations R Rohs, I Bloch, H Sklenar, Z Shakked Nucleic Acids Research 33 (22), 7048-7057, 2005	313	2005
Diversity in DNA recognition by p53 revealed by crystal structures with Hoogsteen base pairs M Kitayner, H Rozenberg, R Rohs, O Suad, D Rabinovich, B Honig, ... Nature Structural & Molecular Biology 17 (4), 423-429, 2010	286	2010
Quantitative modeling of transcription factor binding specificities using DNA shape T Zhou, N Shen, L Yang, N Abe, J Horton, RS Mann, HJ Bussemaker, ... Proceedings of the National Academy of Sciences USA 112 (15), 4654-4659, 2015	272	2015
Coregulation of transcription factor binding and nucleosome occupancy through DNA features of mammalian enhancers I Barozzi, M Simonatto, S Bonifacio, L Yang, R Rohs, S Ghisletti, G Natoli Molecular Cell 54 (5), 844-857, 2014	253	2014
Methylene blue binding to DNA with alternating GC base sequence: a modeling study R Rohs, H Sklenar, R Lavery, B Röder Journal of the American Chemical Society 122 (12), 2860-2866, 2000	216	2000
Deconvolving the recognition of DNA shape from sequence N Abe, I Dror, L Yang, M Slattery, T Zhou, HJ Bussemaker, R Rohs, ... Cell 161 (2), 307-318, 2015	210	2015
Probing DNA shape and methylation state on a genomic scale with DNase I A Lazarovici, T Zhou, A Shafer, AC Dantas Machado, TR Riley, ... Proceedings of the National Academy of Sciences USA 110 (16), 6376-6381, 2013	210	2013
Quantum annealing versus classical machine learning applied to a simplified computational biology problem RY Li, R Di Felice, R Rohs, DA Lidar npj Quantum Information 4 (1), 14, 2018	192	2018
ChEC-seq kinetics discriminates transcription factor binding sites by DNA sequence and shape in vivo GE Zentner, S Kasinathan, B Xin, R Rohs, S Henikoff Nature Communications 6, 8733, 2015	185	2015
A widespread role of the motif environment in transcription factor binding across diverse protein families I Dror, T Golan, C Levy, R Rohs, Y Mandel-Gutfreund Genome Research 25 (9), 1268-1280, 2015	174	2015
Unraveling determinants of transcription factor binding outside the core binding site M Levo, E Zalckvar, E Sharon, AC Dantas Machado, Y Kalma, ... Genome Research 25 (7), 1018-1029, 2015	173	2015
DNAshapeR: an R/Bioconductor package for DNA shape prediction and feature encoding TP Chiu, F Comoglio, T Zhou, L Yang, R Paro, R Rohs Bioinformatics 32 (8), 1211-1213, 2016	170	2016
DNA shape features improve transcription factor binding site predictions in vivo A Mathelier, B Xin, TP Chiu, L Yang, R Rohs, WW Wasserman Cell Systems 3 (3), 278-286, 2016	168	2016

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