Daniel R. Mende

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Peer BorkDirector of EMBL HeidelbergVerificeret mail på embl.de
Shinichi SunagawaETH Zurich; Swiss Institute of BioinformaticsVerificeret mail på ethz.ch
Jaime Huerta-CepasGroup Leader at CBGP (UPM-INIA-CSIC), Madrid, SpainVerificeret mail på embl.de
Ivica Letunićbiobyte solutions GmbHVerificeret mail på biobyte.de
Damian SzklarczykSIB Swiss Institute of Bioinformatics / University of ZurichVerificeret mail på isb-sib.ch
edward francis delongProfessor, University of Hawaii, ManoaVerificeret mail på hawaii.edu
Christian von MeringProfessor of Computational Biology, University of Zurich and Swiss Institute of BioinformaticsVerificeret mail på imls.uzh.ch
Georg ZellerLUMC Leiden & EMBL HeidelbergVerificeret mail på embl.de
Jens Roat KultimaDanish Competition and Consumer Agency; Bioinformatics and Economic Fraud SpecialistVerificeret mail på kfst.dk
Manimozhiyan ArumugamAssociate Professor, Faculty of Health and Medical Sciences, University of CopenhagenVerificeret mail på sund.ku.dk
Luis Pedro CoelhoCentre for Microbiome Research, Queensland University of TechnologyVerificeret mail på qut.edu.au
Thomas Sebastian B. SchmidtSchool of Medicine & APC Microbiome, University College CorkVerificeret mail på ucc.ie
Julien TapINRAE, Université Paris-SaclayVerificeret mail på inrae.fr
Alison S. WallerBrock UniversityVerificeret mail på brocku.ca
George WeinstockDirector of Microbial Genomics, Professor, Jackson LaboratoryVerificeret mail på jax.org
Shamil SunyaevProfessor of Biomedical Informatics and of Medicine (BWH), Harvard Medical SchoolVerificeret mail på rics.bwh.harvard.edu
Vera van Noortprofessor, KULeuvenVerificeret mail på biw.kuleuven.be
Henrik Bjørn NielsenChief Scientific Officer, Clinical-Microbiomics A/SVerificeret mail på clinical-microbiomics.com
Nassos TypasGroup Leader, EMBLVerificeret mail på embl.de
Søren BrunakProfessor of Disease Systems Biology, University of CopenhagenVerificeret mail på cpr.ku.dk

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Daniel R. Mende

Asst. Professor, Amsterdam University Medical Center, University of Amsterdam

Verificeret mail på amsterdamumc.nl

Computational Biology Bioinformatics Evolution Clinical Microbiology


Titel Sortér efter henvisninger Sortér efter årstal Sortér efter titel	Citeret af Citeret af	År
A human gut microbial gene catalogue established by metagenomic sequencing J Qin, R Li, J Raes, M Arumugam, KS Burgdorf, C Manichanh, T Nielsen, ... nature 464 (7285), 59-65, 2010	13841	2010
Enterotypes of the human gut microbiome M Arumugam, J Raes, E Pelletier, D Le Paslier, T Yamada, DR Mende, ... nature 473 (7346), 174-180, 2011	8764	2011
eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses J Huerta-Cepas, D Szklarczyk, D Heller, A Hernández-Plaza, SK Forslund, ... Nucleic acids research 47 (D1), D309-D314, 2019	3562	2019
Structure and function of the global ocean microbiome S Sunagawa, LP Coelho, S Chaffron, JR Kultima, K Labadie, G Salazar, ... Science 348 (6237), 1261359, 2015	2629	2015
eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences J Huerta-Cepas, D Szklarczyk, K Forslund, H Cook, D Heller, MC Walter, ... Nucleic acids research 44 (D1), D286-D293, 2016	2056	2016
Potential of fecal microbiota for early‐stage detection of colorectal cancer G Zeller, J Tap, AY Voigt, S Sunagawa, JR Kultima, PI Costea, A Amiot, ... Molecular systems biology 10 (11), 766, 2014	1202	2014
Genomic variation landscape of the human gut microbiome S Schloissnig, M Arumugam, S Sunagawa, M Mitreva, J Tap, A Zhu, ... Nature 493 (7430), 45-50, 2013	988	2013
Metabolic dependencies drive species co-occurrence in diverse microbial communities A Zelezniak, S Andrejev, O Ponomarova, DR Mende, P Bork, KR Patil Proceedings of the National Academy of Sciences 112 (20), 6449-6454, 2015	750	2015
Metagenomic species profiling using universal phylogenetic marker genes S Sunagawa, DR Mende, G Zeller, F Izquierdo-Carrasco, SA Berger, ... Nature methods 10 (12), 1196-1199, 2013	535	2013
Country-specific antibiotic use practices impact the human gut resistome K Forslund, S Sunagawa, JR Kultima, DR Mende, M Arumugam, A Typas, ... Genome research 23 (7), 1163-1169, 2013	467	2013
Microbial abundance, activity and population genomic profiling with mOTUs2 A Milanese, DR Mende, L Paoli, G Salazar, HJ Ruscheweyh, M Cuenca, ... Nature communications 10 (1), 1014, 2019	444	2019
Accurate and universal delineation of prokaryotic species DR Mende, S Sunagawa, G Zeller, P Bork Nature methods 10 (9), 881-884, 2013	339	2013
Assessment of metagenomic assembly using simulated next generation sequencing data DR Mende, AS Waller, S Sunagawa, AI Järvelin, MM Chan, M Arumugam, ... PloS one 7 (2), e31386, 2012	284	2012
Role for urea in nitrification by polar marine Archaea L Alonso-Sáez, AS Waller, DR Mende, K Bakker, H Farnelid, PL Yager, ... Proceedings of the National Academy of Sciences 109 (44), 17989-17994, 2012	283	2012
Deciphering a global network of functionally associated post‐translational modifications P Minguez, L Parca, F Diella, DR Mende, R Kumar, M Helmer‐Citterich, ... Molecular systems biology 8 (1), 599, 2012	283	2012
Critical assessment of metagenome interpretation: the second round of challenges F Meyer, A Fritz, ZL Deng, D Koslicki, TR Lesker, A Gurevich, G Robertson, ... Nature methods 19 (4), 429-440, 2022	273	2022
MOCAT: a metagenomics assembly and gene prediction toolkit JR Kultima, S Sunagawa, J Li, W Chen, H Chen, DR Mende, ... Public Library of Science 7 (10), e47656, 2012	232	2012
Siderophore-based microbial adaptations to iron scarcity across the eastern Pacific Ocean RM Boiteau, DR Mende, NJ Hawco, MR McIlvin, JN Fitzsimmons, ... Proceedings of the National Academy of Sciences 113 (50), 14237-14242, 2016	228	2016
Inter-individual differences in the gene content of human gut bacterial species A Zhu, S Sunagawa, DR Mende, P Bork Genome biology 16, 1-13, 2015	219	2015
GUNC: detection of chimerism and contamination in prokaryotic genomes A Orakov, A Fullam, LP Coelho, S Khedkar, D Szklarczyk, DR Mende, ... Genome biology 22, 1-19, 2021	176	2021

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