Steven Salzberg

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Mihaela PerteaAssociate Professor, Johns Hopkins UniversityVerificeret mail på jhu.edu
Ben LangmeadAssociate Professor of Computer Science, Johns Hopkins UniversityVerificeret mail på cs.jhu.edu
Daehwan KimOmphalos Lifesciences IncVerificeret mail på omphaloslifesci.com
Cole TrapnellAssociate Professor, Dept. of Genome Sciences, University of WashingtonVerificeret mail på uw.edu
Daniela PuiuJohns Hopkins UniversityVerificeret mail på jhu.edu
Aleksey V ZiminResearch Scientist, Department of Biomedical Engineering, Johns Hopkins UnviersityVerificeret mail på jhu.edu
Mihai PopProfessor of Computer Science, University of Maryland, College ParkVerificeret mail på umd.edu
Owen WhiteDirector of Bioinformatics, Institute for Genome Sciences, Professor, Department of Epidemiology and Preventative, University ofVerificeret mail på som.umaryland.edu
Adam M. PhillippyDirector, Center for Genomics and Data Science Research, NHGRI, NIHVerificeret mail på nih.gov
Florian P BreitwieserPrincipal Software Engineer at SOPHiA GeneticsVerificeret mail på jhu.edu
Michael C. SchatzBloomberg Distinguished Professor, Johns Hopkins UniversityVerificeret mail på cs.jhu.edu
David NealeUniversity California, Davis USDAVerificeret mail på ucdavis.edu
David R KelleyCalico LabsVerificeret mail på calicolabs.com
James YorkeDist. Univ. Research Prof of Math and Physics, Univ. of MarylandVerificeret mail på umd.edu
Jennifer Lu, Ph. D.Staff Scientist, Johns Hopkins UniversityVerificeret mail på jhmi.edu
Brian HaasBroad InstituteVerificeret mail på broadinstitute.org
Charles H. LangleyProfessor, University of California - DavisVerificeret mail på ucdavis.edu
Jonathan A. EisenProfessor, University of California, Davis (UC Davis), Department of Evolution and EcologyVerificeret mail på ucdavis.edu
Sreerama MurthyCEO & Chief Data Scientist, QuadratyxVerificeret mail på quadratyx.com
Derrick WoodBlackjack BiotechnologiesVerificeret mail på cs.jhu.edu

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Steven Salzberg

Bloomberg Distinguished Professor, Johns Hopkins University

Verificeret mail på jhu.edu - Startside

Computational Biology Genomics Bioinformatics Metagenomics Biomedical Data Science


Titel Sortér efter henvisninger Sortér efter årstal Sortér efter titel	Citeret af Citeret af	År
Fast gapped-read alignment with Bowtie 2 B Langmead, SL Salzberg Nature methods 9 (4), 357-359, 2012	51816	2012
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome B Langmead, C Trapnell, M Pop, SL Salzberg Genome biology 10, 1-10, 2009	24326	2009
The sequence of the human genome JC Venter, MD Adams, EW Myers, PW Li, RJ Mural, et al. Science 291 (5507), 1304-1351, 2001	20975	2001
HISAT: a fast spliced aligner with low memory requirements D Kim, B Langmead, SL Salzberg Nature methods 12 (4), 357-360, 2015	19279	2015
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation C Trapnell, BA Williams, G Pertea, A Mortazavi, G Kwan, MJ Van Baren, ... Nature biotechnology 28 (5), 511-515, 2010	16072	2010
TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions D Kim, G Pertea, C Trapnell, H Pimentel, R Kelley, SL Salzberg Genome biology 14, 1-13, 2013	13681	2013
TopHat: discovering splice junctions with RNA-Seq C Trapnell, L Pachter, SL Salzberg Bioinformatics 25 (9), 1105-1111, 2009	13580	2009
FLASH: fast length adjustment of short reads to improve genome assemblies T Magoč, SL Salzberg Bioinformatics 27 (21), 2957-2963, 2011	13469	2011
Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks C Trapnell, A Roberts, L Goff, G Pertea, D Kim, DR Kelley, H Pimentel, ... Nature protocols 7 (3), 562-578, 2012	13309	2012
Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. GI Arabidopsis Nature 408 (6814), 796, 2000	11336	2000
StringTie enables improved reconstruction of a transcriptome from RNA-seq reads M Pertea, GM Pertea, CM Antonescu, TC Chang, JT Mendell, SL Salzberg Nature biotechnology 33 (3), 290-295, 2015	10399	2015
Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype D Kim, JM Paggi, C Park, C Bennett, SL Salzberg Nature biotechnology 37 (8), 907-915, 2019	9595	2019
Versatile and open software for comparing large genomes S Kurtz, A Phillippy, AL Delcher, M Smoot, M Shumway, C Antonescu, ... Genome biology 5 (2), R12, 2004	5763	2004
Genome sequence of the human malaria parasite Plasmodium falciparum MJ Gardner, N Hall, E Fung, O White, M Berriman, RW Hyman, JM Carlton, ... Nature 419 (6906), 498-511, 2002	5580	2002
Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown M Pertea, D Kim, GM Pertea, JT Leek, SL Salzberg Nature protocols 11 (9), 1650-1667, 2016	5531	2016
Kraken: ultrafast metagenomic sequence classification using exact alignments DE Wood, SL Salzberg Genome biology 15, 1-12, 2014	4623	2014
The transcriptional landscape of the mammalian genome P Carninci, T Kasukawa, S Katayama, J Gough, MC Frith, N Maeda, ... science 309 (5740), 1559-1563, 2005	4159	2005
Identifying bacterial genes and endosymbiont DNA with Glimmer AL Delcher, KA Bratke, EC Powers, SL Salzberg Bioinformatics 23 (6), 673-679, 2007	3305	2007
Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments BJ Haas, SL Salzberg, W Zhu, M Pertea, JE Allen, J Orvis, O White, ... Genome biology 9, 1-22, 2008	3038	2008
Improved microbial gene identification with GLIMMER AL Delcher, D Harmon, S Kasif, O White, SL Salzberg Nucleic acids research 27 (23), 4636-4641, 1999	3006	1999

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