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Maria Anisimova
Maria Anisimova
Head of Applied Computational Genomics, ZHAW
Verificeret mail på zhaw.ch
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New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0
S Guindon, JF Dufayard, V Lefort, M Anisimova, W Hordijk, O Gascuel
Systematic biology 59 (3), 307-321, 2010
185442010
Approximate likelihood-ratio test for branches: a fast, accurate, and powerful alternative
M Anisimova, O Gascuel
Systematic biology 55 (4), 539-552, 2006
30622006
Survey of branch support methods demonstrates accuracy, power, and robustness of fast likelihood-based approximation schemes
M Anisimova, M Gil, JF Dufayard, C Dessimoz, O Gascuel
Systematic biology 60 (5), 685-699, 2011
11482011
Accuracy and power of the likelihood ratio test in detecting adaptive molecular evolution
M Anisimova, JP Bielawski, Z Yang
Molecular biology and evolution 18 (8), 1585-1592, 2001
7512001
Effect of recombination on the accuracy of the likelihood method for detecting positive selection at amino acid sites
M Anisimova, R Nielsen, Z Yang
Genetics 164 (3), 1229-1236, 2003
6072003
Accuracy and power of Bayes prediction of amino acid sites under positive selection
M Anisimova, JP Bielawski, Z Yang
Molecular biology and evolution 19 (6), 950-958, 2002
4272002
Morphometric, behavioral, and genomic evidence for a new orangutan species
A Nater, MP Mattle-Greminger, A Nurcahyo, MG Nowak, M De Manuel, ...
Current Biology 27 (22), 3487-3498. e10, 2017
3562017
Tandem repeats lead to sequence assembly errors and impose multi-level challenges for genome and protein databases
OK Tørresen, B Star, P Mier, MA Andrade-Navarro, A Bateman, P Jarnot, ...
Nucleic acids research 47 (21), 10994-11006, 2019
3022019
Repertoire, unified nomenclature and evolution of the Type III effector gene set in the Ralstonia solanacearum species complex
N Peeters, S Carrère, M Anisimova, L Plener, AC Cazalé, S Genin
BMC genomics 14, 1-19, 2013
2572013
Multiple hypothesis testing to detect lineages under positive selection that affects only a few sites
M Anisimova, Z Yang
Molecular biology and evolution 24 (5), 1219-1228, 2007
2122007
Investigating protein-coding sequence evolution with probabilistic codon substitution models
M Anisimova, C Kosiol
Molecular biology and evolution 26 (2), 255-271, 2009
1822009
ALF—A Simulation Framework for Genome Evolution
DA Dalquen, M Anisimova, GH Gonnet, C Dessimoz
Molecular Biology and Evolution, 2011
1802011
Functional diversification of the GALA type III effector family contributes to Ralstonia solanacearum adaptation on different plant hosts
P Remigi, M Anisimova, A Guidot, S Genin, N Peeters
New Phytologist 192 (4), 976-987, 2011
1242011
CodonPhyML: Fast Maximum Likelihood Phylogeny Estimation under Codon Substitution Models
M Gil, S Zanetti, Marcelo Serrano, Zoller, M Anisimova
Mol Biol Evol, doi:10.1093/molbev/mst029, 2013
1172013
The quest for natural selection in the age of comparative genomics
M Anisimova, DA Liberles
Heredity 99 (6), 567-579, 2007
852007
Querying knowledge graphs in natural language
S Liang, K Stockinger, TM De Farias, M Anisimova, M Gil
Journal of big Data 8 (1), 3, 2021
792021
State-of the art methodologies dictate new standards for phylogenetic analysis
M Anisimova, DA Liberles, H Philippe, J Provan, T Pupko, A Von Haeseler
BMC evolutionary biology 13, 1-8, 2013
722013
Phylogenomic analysis of natural selection pressure in Streptococcus genomes
M Anisimova, J Bielawski, K Dunn, Z Yang
BMC evolutionary biology 7, 1-13, 2007
692007
The evolution and function of protein tandem repeats in plants
E Schaper, M Anisimova
New Phytologist 206 (1), 397-410, 2015
682015
Repeat or not repeat?—Statistical validation of tandem repeat prediction in genomic sequences
E Schaper, AV Kajava, A Hauser, M Anisimova
Nucl. Acids Res. 40 (20), 10005-10017, 2012
682012
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Artikler 1–20