| Cell type and gene expression deconvolution with BayesPrism enables Bayesian integrative analysis across bulk and single-cell RNA sequencing in oncology T Chu, Z Wang, D Pe’er, CG Danko Nature Cancer 3 (4), 505-517, 2022 | 274 | 2022 |
| Transcriptional response to stress is pre-wired by promoter and enhancer architecture A Vihervaara, DB Mahat, MJ Guertin, T Chu, CG Danko, JT Lis, L Sistonen Nature communications 8 (1), 255, 2017 | 166 | 2017 |
| Chromatin run-on and sequencing maps the transcriptional regulatory landscape of glioblastoma multiforme T Chu, EJ Rice, GT Booth, HH Salamanca, Z Wang, LJ Core, SL Longo, ... Nature genetics 50 (11), 1553-1564, 2018 | 132 | 2018 |
| Identification of regulatory elements from nascent transcription using dREG Z Wang, T Chu, LA Choate, CG Danko Genome research 29 (2), 293-303, 2019 | 93 | 2019 |
| Prediction of histone post-translational modification patterns based on nascent transcription data Z Wang, AG Chivu, LA Choate, EJ Rice, DC Miller, T Chu, SP Chou, ... Nature genetics 54 (3), 295-305, 2022 | 90* | 2022 |
| Lymphatics act as a signaling hub to regulate intestinal stem cell activity RE Niec, T Chu, M Schernthanner, S Gur-Cohen, L Hidalgo, HA Pasolli, ... Cell stem cell 29 (7), 1067-1082. e18, 2022 | 85 | 2022 |
| Dynamic evolution of regulatory element ensembles in primate CD4+ T cells CG Danko, LA Choate, BA Marks, EJ Rice, Z Wang, T Chu, AL Martins, ... Nature Ecology & Evolution 2 (3), 537-548, 2018 | 69 | 2018 |
| Spatial transcriptomics stratifies psoriatic disease severity by emergent cellular ecosystems RL Castillo, I Sidhu, I Dolgalev, T Chu, A Prystupa, I Subudhi, D Yan, ... Science immunology 8 (84), eabq7991, 2023 | 44 | 2023 |
| Discovering Transcriptional Regulatory Elements From Run‐On and Sequencing Data Using the Web‐Based dREG Gateway T Chu, Z Wang, SP Chou, CG Danko Current protocols in bioinformatics 66 (1), e70, 2019 | 33 | 2019 |
| Conserved transcriptional connectivity of regulatory T cells in the tumor microenvironment informs new combination cancer therapy strategies A Glasner, SA Rose, R Sharma, H Gudjonson, T Chu, JA Green, ... Nature immunology 24 (6), 1020-1035, 2023 | 25 | 2023 |
| Physical confinement induces malignant transformation in mammary epithelial cells YC Lu, T Chu, MS Hall, DJ Fu, Q Shi, A Chiu, D An, LH Wang, Y Pardo, ... Biomaterials 217, 119307, 2019 | 21 | 2019 |
| The ribosomal maturation factor P from Mycobacterium smegmatis facilitates the ribosomal biogenesis by binding to the small ribosomal protein S12 T Chu, X Weng, COK Law, HK Kong, J Lau, S Li, HQ Pham, R Wang, ... Journal of Biological Chemistry 294 (1), 372-378, 2019 | 13 | 2019 |
| A bi-stable feedback loop between GDNF, EGR1, and ERα contribute to endocrine resistant breast cancer S Horibata, EJ Rice, H Zheng, C Mukai, T Chu, BA Marks, SA Coonrod, ... PloS one 13 (4), e0194522, 2018 | 10 | 2018 |
| Rgtsvm: support vector machines on a GPU in R Z Wang, T Chu, LA Choate, CG Danko arXiv preprint arXiv:1706.05544, 2017 | 10 | 2017 |
| The neuroendocrine transition in prostate cancer is dynamic and dependent on ASCL1 R Romero, T Chu, TJ González Robles, P Smith, Y Xie, H Kaur, S Yoder, ... Nature Cancer, 1-19, 2024 | 6 | 2024 |
| Building a science gateway for processing and modeling sequencing data via apache airavata Z Wang, MA Christie, E Abeysinghe, T Chu, S Marru, M Pierce, CG Danko Proceedings of the Practice and Experience on Advanced Research Computing, 1-7, 2018 | 5 | 2018 |
| dHICA: a deep transformer-based model enables accurate histone imputation from chromatin accessibility W Wen, J Zhong, Z Zhang, L Jia, T Chu, N Wang, CG Danko, Z Wang Briefings in Bioinformatics 25 (6), bbae459, 2024 | 2 | 2024 |
| Funmap2: an R package for QTL mapping using longitudinal phenotypes N Wang, T Chu, J Luo, R Wu, Z Wang PeerJ 7, e7008, 2019 | 2 | 2019 |
| Cell-free RNA Liquid Biopsy to Monitor Hematopoietic Stem Cell Transplantation C Loy, MP Cheng, IH Gonzalez-Bocco, J Lenz, E Belcher, A Bliss, ... medRxiv, 2024 | | 2024 |
| BAITSAO: Building A Foundation Model for Drug Synergy Analysis Powered by Language Models T Liu, T Chu, X Luo, H Zhao bioRxiv, 2024.04. 08.588634, 2024 | | 2024 |
Charles G. DankoAssociate Professor, Cornell UniversityBestätigte E-Mail-Adresse bei cornell.edu