| CRISPR RNA-guided integrases for high-efficiency, multiplexed bacterial genome engineering PLH Vo, C Ronda, SE Klompe, EE Chen, C Acree, HH Wang, ... Nature biotechnology 39 (4), 480-489, 2021 | 275 | 2021 |
| CRMAGE: CRISPR optimized mage recombineering C Ronda, LE Pedersen, MOA Sommer, AT Nielsen Scientific reports 6 (1), 19452, 2016 | 252 | 2016 |
| Metagenomic engineering of the mammalian gut microbiome in situ C Ronda, SP Chen, V Cabral, SJ Yaung, HH Wang Nature methods 16 (2), 167-170, 2019 | 241 | 2019 |
| Accelerating genome editing in CHO cells using CRISPR Cas9 and CRISPy, a web‐based target finding tool C Ronda, LE Pedersen, HG Hansen, TB Kallehauge, MJ Betenbaugh, ... Biotechnology and bioengineering 111 (8), 1604-1616, 2014 | 236 | 2014 |
| CrEdit: CRISPR mediated multi-loci gene integration in Saccharomyces cerevisiae C Ronda, J Maury, T Jakočiu̅nas, SA Baallal Jacobsen, SM Germann, ... Microbial cell factories 14, 1-11, 2015 | 180 | 2015 |
| High-throughput microbial culturomics using automation and machine learning Y Huang, RU Sheth, S Zhao, LA Cohen, K Dabaghi, T Moody, Y Sun, ... Nature Biotechnology 41 (10), 1424-1433, 2023 | 116 | 2023 |
| Enhanced protein and biochemical production using CRISPRi-based growth switches S Li, CB Jendresen, A Grünberger, C Ronda, SI Jensen, S Noack, ... Metabolic engineering 38, 274-284, 2016 | 100 | 2016 |
| Multiplex transcriptional characterizations across diverse bacterial species using cell‐free systems SS Yim, NI Johns, J Park, ALC Gomes, RM McBee, M Richardson, ... Molecular Systems Biology 15 (8), e8875, 2019 | 77 | 2019 |
| Intestinal microbiota-specific Th17 cells possess regulatory properties and suppress effector T cells via c-MAF and IL-10 L Brockmann, A Tran, Y Huang, M Edwards, C Ronda, HH Wang, II Ivanov Immunity 56 (12), 2719-2735. e7, 2023 | 33 | 2023 |
| Engineering temporal dynamics in microbial communities C Ronda, HH Wang Current opinion in microbiology 65, 47-55, 2022 | 22 | 2022 |
| Bacterial genome engineering using CRISPR-associated transposases DR Gelsinger, PLH Vo, SE Klompe, C Ronda, HH Wang, SH Sternberg Nature Protocols 19 (3), 752-790, 2024 | 18 | 2024 |
| CRMAGE: CRISPR optimized mage recombineering. Sci Rep 6: 19452 C Ronda, LE Pedersen, MO Sommer, AT Nielsen | 12 | 2016 |
| CRMAGE: CRISPR optimized MAGE recombineering. Sci Rep. 2016; 6: 19452 C Ronda, LE Pedersen, MOA Sommer, AT Nielsen | 7 | |
| Multiplex transcriptional characterizations across diverse and hybrid bacterial cell-free expression systems SS Yim, NI Johns, J Park, ALC Gomes, RM McBee, M Richardson, ... bioRxiv, 427559, 2018 | 6 | 2018 |
| Microbiome and metabolism: Advancements in microbiome engineering CF Mavros, C Ronda Current Opinion in Endocrine and Metabolic Research 27, 100404, 2022 | 5 | 2022 |
| Bacterial genome engineering using CRISPR RNA-guided transposases DR Gelsinger, PLH Vo, SE Klompe, C Ronda, H Wang, SH Sternberg bioRxiv, 2023 | 4 | 2023 |
| Bacterial genome editing strategy for control of transcription and protein stability I Lauritsen, V Martínez, C Ronda, AT Nielsen, MHH Nørholm Synthetic Metabolic Pathways: Methods and Protocols, 27-37, 2018 | 2 | 2018 |
| Multiplex transcriptional characterizations across diverse and hybrid bacterial cell-free expression systems RM McBee, M Richardson, C Ronda, SP Chen, D Garenne, V Noireaux, ... Gene Regulatory Compatibility in Bacteria: Consequences for Synthetic …, 2019 | | 2019 |
| Consortia based production of biochemicals SI Jensen, S Sukumara, E Özdemir, K Schneider, S Li, PC Valdayo, ... Danish Microbiological Society Annual Congress 2016, 84-85, 2016 | | 2016 |
| Multiplex editing system LE Pedersen, C Ronda, HF Kildegaard, JS Lee WO Patent 2,015,052,231, 2015 | | 2015 |
