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Joseph Nasser
Joseph Nasser
Bestätigte E-Mail-Adresse bei brandeis.edu
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Zitiert von
Zitiert von
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Activity-by-contact model of enhancer–promoter regulation from thousands of CRISPR perturbations
CP Fulco, J Nasser, TR Jones, G Munson, DT Bergman, V Subramanian, ...
Nature genetics 51 (12), 1664-1669, 2019
8682019
Inherited causes of clonal haematopoiesis in 97,691 whole genomes
AG Bick, JS Weinstock, SK Nandakumar, CP Fulco, EL Bao, SM Zekavat, ...
Nature 586 (7831), 763-768, 2020
5712020
Genome-wide enhancer maps link risk variants to disease genes
J Nasser, DT Bergman, CP Fulco, P Guckelberger, BR Doughty, ...
Nature 593 (7858), 238-243, 2021
5082021
Leveraging polygenic enrichments of gene features to predict genes underlying complex traits and diseases
EM Weeks, JC Ulirsch, NY Cheng, BL Trippe, RS Fine, J Miao, ...
Nature Genetics, 1-10, 2023
2042023
Compatibility rules of human enhancer and promoter sequences
DT Bergman, TR Jones, V Liu, J Ray, E Jagoda, L Siraj, HY Kang, ...
Nature 607 (7917), 176-184, 2022
1172022
Combining SNP-to-gene linking strategies to identify disease genes and assess disease omnigenicity
S Gazal, O Weissbrod, F Hormozdiari, KK Dey, J Nasser, KA Jagadeesh, ...
Nature genetics 54 (6), 827-836, 2022
1142022
Detecting genome-wide directional effects of transcription factor binding on polygenic disease risk
YA Reshef, HK Finucane, DR Kelley, A Gusev, D Kotliar, JC Ulirsch, ...
Nature genetics 50 (10), 1483-1493, 2018
712018
KLF4 recruits SWI/SNF to increase chromatin accessibility and reprogram the endothelial enhancer landscape under laminar shear stress
JR Moonen, J Chappell, M Shi, T Shinohara, D Li, MR Mumbach, F Zhang, ...
Nature communications 13 (1), 4941, 2022
472022
An encyclopedia of enhancer-gene regulatory interactions in the human genome
AR Gschwind, KS Mualim, A Karbalayghareh, MU Sheth, KK Dey, ...
bioRxiv, 2023
312023
HyPR-seq: Single-cell quantification of chosen RNAs via hybridization and sequencing of DNA probes
JL Marshall, BR Doughty, V Subramanian, P Guckelberger, Q Wang, ...
Proceedings of the National Academy of Sciences 117 (52), 33404-33413, 2020
282020
SNP-to-gene linking strategies reveal contributions of enhancer-related and candidate master-regulator genes to autoimmune disease
KK Dey, S Gazal, B van de Geijn, SS Kim, J Nasser, JM Engreitz, AL Price
Cell genomics 2 (7), 2022
262022
Inherited causes of clonal hematopoiesis of indeterminate potential in TOPMed whole genomes
AG Bick, JS Weinstock, SK Nandakumar, CP Fulco, MJ Leventhal, EL Bao, ...
BioRxiv, 782748, 2019
232019
Functional disease architectures reveal unique biological role of transposable elements
F Hormozdiari, B van de Geijn, J Nasser, O Weissbrod, S Gazal, CJT Ju, ...
Nature communications 10 (1), 4054, 2019
152019
Contribution of enhancer-driven and master-regulator genes to autoimmune disease revealed using functionally informed SNP-to-gene linking strategies
KK Dey, SK Gazal, B van de Geijn, SS Kim, J Nasser, JM Engreitz, A Price
bioRxiv, 2020.09. 02.279059, 2021
82021
Cohesin-mediated 3D contacts tune enhancer-promoter regulation
P Guckelberger, BR Doughty, G Munson, SSP Rao, Y Tan, XS Cai, ...
bioRxiv, 2024.07. 12.603288, 2024
52024
Combining SNP-to-gene linking strategies to pinpoint disease genes and assess disease omnigenicity
S Gazal, O Weissbrod, F Hormozdiari, K Dey, J Nasser, K Jagadeesh, ...
medRxiv, 2021
52021
Integrative approaches to improve the informativeness of deep learning models for human complex diseases
KK Dey, SS Kim, S Gazal, J Nasser, JM Engreitz, A Price
bioRxiv, 2020
32020
HyPR Protocol
J Marshall, BR Doughty, V Subramanian, P Guckelberger, Q Wang, ...
12020
A mathematical model clarifies the ABC Score formula used in enhancer-gene prediction
J Nasser, KM Nam, J Gunawardena
bioRxiv, 2024.11. 29.626072, 2024
2024
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