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Ya Yang 杨涯
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Analysis of phylogenomic datasets reveals conflict, concordance, and gene duplications with examples from animals and plants
SA Smith, MJ Moore, JW Brown, Y Yang
BMC evolutionary biology 15 (1), 150, 2015
4272015
Orthology inference in nonmodel organisms using transcriptomes and low-coverage genomes: improving accuracy and matrix occupancy for phylogenomics
Y Yang, SA Smith
Molecular biology and evolution 31 (11), 3081-3092, 2014
3472014
Optimizing de novo assembly of short-read RNA-seq data for phylogenomics
Y Yang, SA Smith
BMC genomics 14, 1-11, 2013
2342013
Dissecting molecular evolution in the highly diverse plant clade Caryophyllales using transcriptome sequencing
Y Yang, MJ Moore, SF Brockington, DE Soltis, GKS Wong, EJ Carpenter, ...
Molecular Biology and Evolution 32 (8), 2001-2014, 2015
2142015
Practical considerations for plant phylogenomics
MR McKain, MG Johnson, S Uribe‐Convers, D Eaton, Y Yang
Applications in plant sciences 6 (3), e1038, 2018
2022018
Lineage‐specific gene radiations underlie the evolution of novel betalain pigmentation in Caryophyllales
SF Brockington, Y Yang, F Gandia‐Herrero, S Covshoff, JM Hibberd, ...
New Phytologist 207 (4), 1170-1180, 2015
1842015
Disentangling Sources of Gene Tree Discordance in Phylogenomic Data Sets: Testing Ancient Hybridizations in Amaranthaceae sl
DF Morales-Briones, G Kadereit, DT Tefarikis, MJ Moore, SA Smith, ...
Systematic Biology 70 (2), 219-235, 2021
1692021
Molecular phylogenetics and classification of Euphorbia subgenus Chamaesyce (Euphorbiaceae)
Y Yang, R Riina, JJ Morawetz, T Haevermans, X Aubriot, PE Berry
Taxon 61 (4), 764-789, 2012
1612012
Evolutionary bursts in Euphorbia (Euphorbiaceae) are linked with photosynthetic pathway
JW Horn, Z Xi, R Riina, JA Peirson, Y Yang, BL Dorsey, PE Berry, ...
Evolution 68 (12), 3485-3504, 2014
1522014
From cacti to carnivores: Improved phylotranscriptomic sampling and hierarchical homology inference provide further insight into the evolution of Caryophyllales
JF Walker, Y Yang, T Feng, A Timoneda, J Mikenas, V Hutchison, ...
American journal of botany 105 (3), 446-462, 2018
1102018
Improved transcriptome sampling pinpoints 26 ancient and more recent polyploidy events in Caryophyllales, including two allopolyploidy events
Y Yang, MJ Moore, SF Brockington, J Mikenas, J Olivieri, JF Walker, ...
New Phytologist 217 (2), 855-870, 2018
1062018
Relaxation of tyrosine pathway regulation underlies the evolution of betalain pigmentation in Caryophyllales
S Lopez‐Nieves, Y Yang, A Timoneda, M Wang, T Feng, SA Smith, ...
New Phytologist 217 (2), 896-908, 2018
1012018
Phylogenomics and the rise of the angiosperms
AR Zuntini, T Carruthers, O Maurin, PC Bailey, K Leempoel, GE Brewer, ...
Nature, 1-8, 2024
992024
Phylogenetics of the Chamaesyce clade (Euphorbia, Euphorbiaceae): reticulate evolution and long-distance dispersal in a prominent C4 lineage
Y Yang, PE Berry
American Journal of Botany 98 (9), 1486-1503, 2011
952011
Disparity, diversity, and duplications in the Caryophyllales
SA Smith, JW Brown, Y Yang, R Bruenn, CP Drummond, SF Brockington, ...
New Phytologist 217 (2), 836-854, 2018
882018
Evolution of Portulacineae marked by gene tree conflict and gene family expansion associated with adaptation to harsh environments
N Wang, Y Yang, MJ Moore, SF Brockington, JF Walker, JW Brown, ...
Molecular biology and evolution 36 (1), 112-126, 2019
672019
Widespread paleopolyploidy, gene tree conflict, and recalcitrant relationships among the carnivorous Caryophyllales
JF Walker, Y Yang, MJ Moore, J Mikenas, A Timoneda, SF Brockington, ...
American Journal of Botany 104 (6), 858-867, 2017
602017
Analysis of Paralogs in Target Enrichment Data Pinpoints Multiple Ancient Polyploidy Events in Alchemilla s.l. (Rosaceae)
DF Morales-Briones, B Gehrke, CH Huang, A Liston, H Ma, HE Marx, ...
Systematic Biology 71 (1), 190-207, 2022
522022
Large-scale patterns of stomatal traits in Tibetan and Mongolian grassland species
X Yang, Y Yang, C Ji, T Feng, Y Shi, L Lin, J Ma, JS He
Basic and Applied Ecology 15 (2), 122-132, 2014
332014
Differential retention contributes to racial/ethnic disparity in US academia
AK Shaw, C Accolla, JM Chacón, TL Mueller, M Vaugeois, Y Yang, ...
Plos one 16 (12), e0259710, 2021
312021
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