Pan-cancer patterns of somatic copy number alteration TI Zack, SE Schumacher, SL Carter, AD Cherniack, G Saksena, B Tabak, ... Nature genetics 45 (10), 1134-1140, 2013 | 2035 | 2013 |
Pan-cancer analysis of whole genomes Nature 578 (7793), 82-93, 2020 | 2006* | 2020 |
Molecular subtypes of diffuse large B cell lymphoma are associated with distinct pathogenic mechanisms and outcomes B Chapuy, C Stewart, AJ Dunford, J Kim, A Kamburov, RA Redd, ... Nature medicine 24 (5), 679-690, 2018 | 1800 | 2018 |
Distinct patterns of somatic genome alterations in lung adenocarcinomas and squamous cell carcinomas JD Campbell, A Alexandrov, J Kim, J Wala, AH Berger, CS Pedamallu, ... Nature genetics 48 (6), 607-616, 2016 | 1222 | 2016 |
Patterns of somatic structural variation in human cancer genomes Y Li, ND Roberts, JA Wala, O Shapira, SE Schumacher, K Kumar, ... Nature 578 (7793), 112-121, 2020 | 823 | 2020 |
Comprehensive analysis of chromothripsis in 2,658 human cancers using whole-genome sequencing I Cortés-Ciriano, JJK Lee, R Xi, D Jain, YL Jung, L Yang, D Gordenin, ... Nature genetics 52 (3), 331-341, 2020 | 644 | 2020 |
Analyses of non-coding somatic drivers in 2,658 cancer whole genomes E Rheinbay, MM Nielsen, F Abascal, JA Wala, O Shapira, G Tiao, ... Nature 578 (7793), 102-111, 2020 | 583 | 2020 |
SvABA: genome-wide detection of structural variants and indels by local assembly JA Wala, P Bandopadhayay, NF Greenwald, R O'Rourke, T Sharpe, ... Genome research 28 (4), 581-591, 2018 | 390 | 2018 |
Pan-cancer analysis of whole genomes identifies driver rearrangements promoted by LINE-1 retrotransposition B Rodriguez-Martin, EG Alvarez, A Baez-Ortega, J Zamora, F Supek, ... Nature genetics 52 (3), 306-319, 2020 | 386 | 2020 |
Structural alterations driving castration-resistant prostate cancer revealed by linked-read genome sequencing SR Viswanathan, G Ha, AM Hoff, JA Wala, J Carrot-Zhang, CW Whelan, ... Cell 174 (2), 433-447. e19, 2018 | 359 | 2018 |
A robust benchmark for detection of germline large deletions and insertions JM Zook, NF Hansen, ND Olson, L Chapman, JC Mullikin, C Xiao, ... Nature biotechnology 38 (11), 1347-1355, 2020 | 332 | 2020 |
MYB-QKI rearrangements in angiocentric glioma drive tumorigenicity through a tripartite mechanism P Bandopadhayay, LA Ramkissoon, P Jain, G Bergthold, J Wala, R Zeid, ... Nature genetics 48 (3), 273-282, 2016 | 302 | 2016 |
Distinct classes of complex structural variation uncovered across thousands of cancer genome graphs K Hadi, X Yao, JM Behr, A Deshpande, C Xanthopoulakis, H Tian, ... Cell 183 (1), 197-210. e32, 2020 | 213 | 2020 |
Genomic landscape of high-grade meningiomas WL Bi, NF Greenwald, M Abedalthagafi, J Wala, WJ Gibson, PK Agarwalla, ... NPJ genomic medicine 2 (1), 1-14, 2017 | 212 | 2017 |
The genomic landscape and evolution of endometrial carcinoma progression and abdominopelvic metastasis WJ Gibson, EA Hoivik, MK Halle, A Taylor-Weiner, AD Cherniack, A Berg, ... Nature genetics 48 (8), 848-855, 2016 | 203 | 2016 |
Multicriteria VMAT optimization D Craft, D McQuaid, J Wala, W Chen, E Salari, T Bortfeld Medical physics 39 (2), 686-696, 2012 | 152 | 2012 |
Oncogenic RIT1 mutations in lung adenocarcinoma AH Berger, M Imielinski, F Duke, J Wala, N Kaplan, GX Shi, DA Andres, ... Oncogene 33 (35), 4418-4423, 2014 | 99 | 2014 |
The whole-genome panorama of cancer drivers R Sabarinathan, O Pich, I Martincorena, C Rubio-Perez, M Juul, J Wala, ... BioRxiv, 190330, 2017 | 57 | 2017 |
Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples MH Bailey, WU Meyerson, LJ Dursi, LB Wang, G Dong, WW Liang, ... Nature communications 11 (1), 4748, 2020 | 46 | 2020 |
Renal medullary carcinomas depend upon SMARCB1 loss and are sensitive to proteasome inhibition AL Hong, YY Tseng, JA Wala, WJ Kim, BD Kynnap, MB Doshi, G Kugener, ... Elife 8, e44161, 2019 | 46 | 2019 |