| Pan-cancer T cell atlas links a cellular stress response state to immunotherapy resistance Y Chu, E Dai, Y Li, G Han, G Pei, DR Ingram, K Thakkar, JJ Qin, M Dang, ... Nature medicine 29 (6), 1550-1562, 2023 | 163 | 2023 |
| Multiple “Omics” data-based biomarker screening for hepatocellular carcinoma diagnosis XN Liu, DN Cui, YF Li, YH Liu, G Liu, L Liu World Journal of Gastroenterology 25 (30), 4199, 2019 | 72 | 2019 |
| An atlas of epithelial cell states and plasticity in lung adenocarcinoma G Han, A Sinjab, Z Rahal, AM Lynch, W Treekitkarnmongkol, Y Liu, ... Nature 627 (8004), 656-663, 2024 | 46 | 2024 |
| Profiling cell identity and tissue architecture with single-cell and spatial transcriptomics GS Gulati, JP D’Silva, Y Liu, L Wang, AM Newman Nature Reviews Molecular Cell Biology, 1-21, 2024 | 18 | 2024 |
| Single-cell transcriptomic analysis reveals macrophage–tumor crosstalk in hepatocellular carcinoma Y Liu, L Zhang, X Ju, S Wang, J Qie Frontiers in immunology 13, 955390, 2022 | 17 | 2022 |
| One-lincRNA and five-mRNA based signature for prognosis of multiple myeloma patients undergoing proteasome inhibitors therapy Y Liu, N Yang, X Peng, G Liu, H Zhong, L Liu Biomedicine & Pharmacotherapy 118, 109254, 2019 | 11 | 2019 |
| Identification of metabolism‐associated molecular subtype in ovarian cancer X Liu, A Wu, X Wang, Y Liu, Y Xu, G Liu, L Liu Journal of Cellular and Molecular Medicine 25 (20), 9617-9626, 2021 | 9 | 2021 |
| Attention-based deep multiple-instance learning for classifying circular RNA and other Long non-coding RNA Y Liu, Q Fu, X Peng, C Zhu, G Liu, L Liu Genes 12 (12), 2018, 2021 | 8 | 2021 |
| METI: deep profiling of tumor ecosystems by integrating cell morphology and spatial transcriptomics J Jiang, Y Liu, J Qin, J Chen, J Wu, MP Pizzi, R Lazcano, K Yamashita, ... Nature communications 15 (1), 7312, 2024 | 4 | 2024 |
| Pan-cancer genome-wide DNA methylation analyses revealed that hypermethylation influences 3D architecture and gene expression dysregulation in HOXA locus during carcinogenesis … G Liu, Z Liu, X Sun, X Xia, Y Liu, L Liu Frontiers in Cell and Developmental Biology 9, 649168, 2021 | 4 | 2021 |
| Atlas of metastatic gastric cancer links ferroptosis to disease progression and immunotherapy response X Cheng, E Dai, J Wu, NM Flores, Y Chu, R Wang, M Dang, Z Xu, G Han, ... Gastroenterology 167 (7), 1345-1357, 2024 | 3 | 2024 |
| Single-cell transcriptome profiling Simulation reveals the impact of sequencing parameters and algorithms on clustering Y Liu, A Wu, X Peng, X Liu, G Liu, L Liu Life 11 (7), 716, 2021 | 1 | 2021 |
| A comparison of scRNA-seq annotation methods based on experimentally labeled immune cell subtype dataset Q Fu, C Dong, Y Liu, X Xia, G Liu, F Zhong, L Liu Briefings in Bioinformatics 25 (5), bbae392, 2024 | | 2024 |
| Optimization and redevelopment of single-cell data analysis workflow based on deep generative models Y Liu, Q Fu, C Dong, X Xia, G Liu, L Liu bioRxiv, 2022.09. 12.507562, 2022 | | 2022 |
