| Spatial transcriptomics prediction from histology jointly through transformer and graph neural networks Y Zeng, Z Wei, W Yu, R Yin, Y Yuan, B Li, Z Tang, Y Lu, Y Yang Briefings in Bioinformatics 23 (5), bbac297, 2022 | 91 | 2022 |
| Accurately clustering single-cell RNA-seq data by capturing structural relations between cells through graph convolutional network Y Zeng, X Zhou, J Rao, Y Lu, Y Yang 2020 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2020 | 62 | 2020 |
| Identifying spatial domain by adapting transcriptomics with histology through contrastive learning Y Zeng, R Yin, M Luo, J Chen, Z Pan, Y Lu, W Yu, Y Yang Briefings in Bioinformatics 24 (2), bbad048, 2023 | 31 | 2023 |
| A robust and scalable graph neural network for accurate single-cell classification Y Zeng, Z Wei, Z Pan, Y Lu, Y Yang Briefings in Bioinformatics 23 (2), bbab570, 2022 | 23 | 2022 |
| Identifying B-cell epitopes using AlphaFold2 predicted structures and pretrained language model Y Zeng, Z Wei, Q Yuan, S Chen, W Yu, Y Lu, J Gao, Y Yang Bioinformatics, 2022.12. 06.519221, 2022 | 22 | 2022 |
| The design of an efficient swap mechanism for hybrid DRAM-NVM systems X Chen, EHM Sha, W Jiang, Q Zhuge, J Chen, J Qin, Y Zeng Proceedings of the 13th International Conference on Embedded Software, 1-10, 2016 | 22 | 2016 |
| scAdapt: Virtual adversarial domain adaptation network for single cell RNA-seq data classification across platforms and species X Zhou, H Chai, Y Zeng, H Zhao, CH Luo, Y Yang Brief in bioinformatics, 2021 | 21 | 2021 |
| A Parameter-free Deep Embedded Clustering Method for Single-cell RNA-seq Data Y Zeng, Z Wei, F Zhong, Z Pan, Y Lu, Y Yang Brief in bioinformatics, 2021 | 16 | 2021 |
| Efficient wear leveling for inodes of file systems on persistent memories X Chen, EHM Sha, Y Zeng, C Yang, W Jiang, Q Zhuge 2018 Design, Automation & Test in Europe Conference & Exhibition (DATE …, 2018 | 9 | 2018 |
| Deciphering cell types by integrating scATAC-seq data with genome sequences Y Zeng, M Luo, N Shangguan, P Shi, J Feng, J Xu, K Chen, Y Lu, W Yu, ... Nature Computational Science, 1-14, 2024 | 6 | 2024 |
| Accurately predicting enzyme functions through geometric graph learning on ESMFold-predicted structures Y Song, Q Yuan, S Chen, Y Zeng, H Zhao, Y Yang Nature Communications 15 (1), 8180, 2024 | 4 | 2024 |
| A Meta-learning based Graph-Hierarchical Clustering Method for Single Cell RNA-Seq Data Z Pan, Y Lin, H Zhang, Y Zeng, W Yu, Y Yang 2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2022 | 3 | 2022 |
| Imputing spatial transcriptomics through gene network constructed from protein language model Y Zeng, Y Song, C Zhang, H Li, Y Zhao, W Yu, S Zhang, H Zhang, Z Dai, ... Communications Biology 7 (1), 1271, 2024 | 1 | 2024 |
| SCdenoise: a reference-based scRNA-seq denoising method using semi-supervised learning F Zhong, Y Zeng, Y Liu, Y Yang 2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2022 | 1 | 2022 |
| Graph convolutional network-based method for clustering single-cell RNA-seq data Y Zeng, J Lin, X Zhou, Y Lu, Y Yang | 1 | 2020 |
| An efficient file system for hybrid in-memory nvm and block devices Y Zeng, EHM Sha, Q Zhuge, X Chen, Z Ma, L Wu 2018 IEEE 7th Non-Volatile Memory Systems and Applications Symposium (NVMSA …, 2018 | 1 | 2018 |
| Integrating single-cell multi-omics data through self-supervised clustering Y Zeng, J Chen, Z Pan, W Yu, Y Yang Applied Soft Computing 169, 112541, 2025 | | 2025 |
| Mamba-DTA: Drug-Target Binding Affinity Prediction with State Space Model Y Wu, J Xie, J Nie, X Zhang, Y Zeng 2024 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2024 | | 2024 |
| Dual Interaction and Kernel-Diverse Network for Accurate Drug-Target Binding Affinity Prediction Y Wu, J Xie, J Nie, J Hu, Y Zeng 2024 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2024 | | 2024 |
| Graph learning of disentangled representation for accurately aligning multiple spatial slices J Chen, Y Zeng, N Shangguan, W Zhou, W Li, Y Yang Proceedings of the 15th ACM International Conference on Bioinformatics …, 2024 | | 2024 |
Yuedong YangSchool of Computer Science and Engineering, Sun Yat-sen UniversityBestätigte E-Mail-Adresse bei mail.sysu.edu.cn