Jesse RR Zaneveld

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Rebecca Vega ThurberDistinguished Professor of Microbiology Oregon State UniversityBestätigte E-Mail-Adresse bei oregonstate.edu
Dan KnightsUniversity of MinnesotaBestätigte E-Mail-Adresse bei umn.edu
Catherine LozuponeAssociate Professor of Medicine, University of Colorado, DenverBestätigte E-Mail-Adresse bei ucdenver.edu
Ryan McMindsNorthwest Indian Fisheries CommissionBestätigte E-Mail-Adresse bei nwifc.org
Daniel McDonaldAmerican Gut, Knight Lab, Department of Pediatrics, UCSDBestätigte E-Mail-Adresse bei ucsd.edu
Deron BurkepileProfessor - Ecology, Evolution, & Marine Biology - University of California, Santa BarbaraBestätigte E-Mail-Adresse bei lifesci.ucsb.edu
Curtis HuttenhowerDepartment of Biostatistics, Harvard School of Public HealthBestätigte E-Mail-Adresse bei hsph.harvard.edu
Morgan LangilleProfessor, Dalhousie UniversityBestätigte E-Mail-Adresse bei dal.ca
J Gregory CaporasoNorthern Arizona UniversityBestätigte E-Mail-Adresse bei nau.edu
Rob BeikoAssociate Professor of Computer Science, Dalhousie UniversityBestätigte E-Mail-Adresse bei dal.ca
Rory WelshUS Centers for Disease Control and PreventionBestätigte E-Mail-Adresse bei cdc.gov
Noah FiererProfessor, University of Colorado at BoulderBestätigte E-Mail-Adresse bei colorado.edu
Ruth E. LeyDepartment of Microbiome Science, Max Planck Institute for Biology, TübingenBestätigte E-Mail-Adresse bei tuebingen.mpg.de
Laura Wegener ParfreyAssociate Professor, University of British ColumbiaBestätigte E-Mail-Adresse bei botany.ubc.ca
Federico E. ReyUniversity of Wisconsin-MadisonBestätigte E-Mail-Adresse bei wisc.edu
Peter TurnbaughUniversity of California, San FranciscoBestätigte E-Mail-Adresse bei ucsf.edu

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Jesse RR Zaneveld

Associate Professor, Division of Biological Sciences, University of Washington, Bothell

Bestätigte E-Mail-Adresse bei uw.edu

Microbial Ecology Bioinformatics Coral Genome Evolution Phylogenetic prediction


Titel Nach Zitationen sortieren Nach Jahr sortieren Nach Titel sortieren	Zitiert von Zitiert von	Jahr
QIIME allows analysis of high-throughput community sequencing data JG Caporaso, J Kuczynski, J Stombaugh, K Bittinger, FD Bushman, ... Nature methods 7 (5), 335-336, 2010	36497	2010
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2 E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ... Nature biotechnology 37 (8), 852-857, 2019	18374	2019
Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences MGI Langille, J Zaneveld, JG Caporaso, D McDonald, D Knights, ... Nature biotechnology 31 (9), 814-821, 2013	9053	2013
PICRUSt2 for prediction of metagenome functions GM Douglas, VJ Maffei, JR Zaneveld, SN Yurgel, JR Brown, CM Taylor, ... Nature biotechnology 38 (6), 685-688, 2020	4804*	2020
A communal catalogue reveals Earth’s multiscale microbial diversity LR Thompson, JG Sanders, D McDonald, A Amir, J Ladau, KJ Locey, ... Nature, 2017	2523	2017
Normalization and microbial differential abundance strategies depend upon data characteristics S Weiss, ZZ Xu, S Peddada, A Amir, K Bittinger, A Gonzalez, C Lozupone, ... Microbiome 5, 1-18, 2017	2056	2017
Comparative metagenomic, phylogenetic and physiological analyses of soil microbial communities across nitrogen gradients N Fierer, CL Lauber, KS Ramirez, J Zaneveld, MA Bradford, R Knight The ISME journal 6 (5), 1007-1017, 2012	1817	2012
Best practices for analysing microbiomes R Knight, A Vrbanac, BC Taylor, A Aksenov, C Callewaert, J Debelius, ... Nature Reviews Microbiology 16 (7), 410-422, 2018	1686	2018
Bayesian community-wide culture-independent microbial source tracking D Knights, J Kuczynski, ES Charlson, J Zaneveld, MC Mozer, RG Collman, ... Nature methods 8 (9), 761-763, 2011	1635	2011
Stress and stability: applying the Anna Karenina principle to animal microbiomes JR Zaneveld, R McMinds, R Vega Thurber Nature Microbiology, 2017	862	2017
Overfishing and nutrient pollution interact with temperature to disrupt coral reefs down to microbial scales JR Zaneveld, DE Burkepile, AA Shantz, CE Pritchard, R McMinds, ... Nature communications 7 (1), 1-12, 2016	566	2016
Chronic nutrient enrichment increases prevalence and severity of coral disease and bleaching RL Vega Thurber, DE Burkepile, C Fuchs, AA Shantz, R McMinds, ... Global change biology 20 (2), 544-554, 2014	556	2014
Coral-associated bacteria demonstrate phylosymbiosis and cophylogeny FJ Pollock, R McMinds, S Smith, DG Bourne, BL Willis, M Medina, ... Nature communications 9 (1), 4921, 2018	346	2018
Natural volcanic CO₂ seeps reveal future trajectories for host–microbial associations in corals and sponges KM Morrow, DG Bourne, C Humphrey, ES Botté, P Laffy, J Zaneveld, ... The ISME journal 9 (4), 894-908, 2015	284	2015
Pan-genome of the dominant human gut-associated archaeon, Methanobrevibacter smithii, studied in twins EE Hansen, CA Lozupone, FE Rey, M Wu, JL Guruge, A Narra, ... Proceedings of the National Academy of Sciences 108 (supplement_1), 4599-4606, 2011	272	2011
One health relationships between human, animal, and environmental microbiomes: a mini-review P Trinh, JR Zaneveld, S Safranek, PM Rabinowitz Frontiers in public health 6, 235, 2018	223	2018
Direct sequencing of the human microbiome readily reveals community differences J Kuczynski, EK Costello, DR Nemergut, J Zaneveld, CL Lauber, ... Genome biology 11, 1-9, 2010	202	2010
Identifying genomic and metabolic features that can underlie early successional and opportunistic lifestyles of human gut symbionts C Lozupone, K Faust, J Raes, JJ Faith, DN Frank, J Zaneveld, JI Gordon, ... Genome Research, 2012	196	2012
Human-associated microbial signatures: examining their predictive value D Knights, LW Parfrey, J Zaneveld, C Lozupone, R Knight Cell host & microbe 10 (4), 292-296, 2011	184	2011
Host-bacterial coevolution and the search for new drug targets J Zaneveld, PJ Turnbaugh, C Lozupone, RE Ley, M Hamady, JI Gordon, ... Current opinion in chemical biology 12 (1), 109-114, 2008	135	2008

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