| Next-generation characterization of the cancer cell line encyclopedia M Ghandi, FW Huang, J Jané-Valbuena, GV Kryukov, CC Lo, ... Nature 569 (7757), 503-508, 2019 | 2853 | 2019 |
| Phenotype, function, and differentiation potential of human monocyte subsets LB Boyette, C Macedo, K Hadi, BD Elinoff, JT Walters, B Ramaswami, ... PloS one 12 (4), e0176460, 2017 | 502 | 2017 |
| Distinct classes of complex structural variation uncovered across thousands of cancer genome graphs K Hadi, X Yao, JM Behr, A Deshpande, C Xanthopoulakis, H Tian, ... Cell 183 (1), 197-210. e32, 2020 | 212 | 2020 |
| Genomic signature of Fanconi anaemia DNA repair pathway deficiency in cancer ALH Webster, MA Sanders, K Patel, R Dietrich, RJ Noonan, FP Lach, ... Nature 612 (7940), 495-502, 2022 | 51 | 2022 |
| Impact of induction therapy on circulating T follicular helper cells and subsequent donor-specific antibody formation after kidney transplant C Macedo, K Hadi, J Walters, B Elinoff, M Marrari, A Zeevi, B Ramaswami, ... Kidney International Reports 4 (3), 455-469, 2019 | 33 | 2019 |
| Human immunodeficiency virus type 1 Vpr polymorphisms associated with progressor and nonprogressor individuals alter Vpr-associated functions K Hadi, LA Walker, D Guha, R Murali, SC Watkins, P Tarwater, ... Journal of General Virology 95 (3), 700-711, 2014 | 27 | 2014 |
| Somatic whole genome dynamics of precancer in Barrett’s esophagus reveals features associated with disease progression TG Paulson, PC Galipeau, KM Oman, CA Sanchez, MK Kuhner, LP Smith, ... Nature communications 13 (1), 2300, 2022 | 25 | 2022 |
| Most large structural variants in cancer genomes can be detected without long reads ZN Choo, JM Behr, A Deshpande, K Hadi, X Yao, H Tian, K Takai, ... Nature Genetics 55 (12), 2139-2148, 2023 | 21 | 2023 |
| Long-molecule scars of backup DNA repair in BRCA1-and BRCA2-deficient cancers J Setton, K Hadi, ZN Choo, KS Kuchin, H Tian, A Da Cruz Paula, ... Nature 621 (7977), 129-137, 2023 | 18 | 2023 |
| Novel patterns of complex structural variation revealed across thousands of cancer genome graphs K Hadi, X Yao, JM Behr, A Deshpande, C Xanthopoulakis, J Rosiene, ... BioRxiv, 836296, 2019 | 15 | 2019 |
| Whole-genome Analysis Elucidates Complex Genomic Events in GLI1-rearranged Enteric Tumor NL Mendelson, M Al Assaad, K Hadi, J Manohar, M Sigouros, A Sboner, ... The American Journal of Surgical Pathology 47 (10), 1192-1193, 2023 | 10 | 2023 |
| Fanconi anemia pathway deficiency drives copy number variation in squamous cell carcinomas ALH Webster, MA Sanders, K Patel, R Dietrich, RJ Noonan, FP Lach, ... Biorxiv, 2021.08. 14.456365, 2021 | 10 | 2021 |
| A whole genome sequencing classifier of homologous recombination deficiency K Hadi, G Gundem, MF Levine, A Deshpande, M Patel, S Skzrypczak, ... Cancer Research 83 (7_Supplement), 2149-2149, 2023 | 7 | 2023 |
| Somatic whole genome dynamics of precancer in Barrett’s esophagus T Paulson, P Galipeau, K Oman, C Sanchez, M Kuhner, L Smith, K Hadi, ... | 4 | 2021 |
| Loose ends in cancer genome structure JM Behr Weill Medical College of Cornell University, 2021 | 3 | 2021 |
| A mutagenesis approach for the study of the structure-function relationship of Human Immunodeficiency Virus type 1 (HIV-1) Vpr K Hadi, O Tastan, A Srinivasan, V Ayyavoo Genetic Manipulation of DNA and Protein-Examples from Current Research, 2013 | 3 | 2013 |
| Whole Genome Landscape Analysis of Homologous Recombination Deficiency in a Pan-Cancer Cohort M Al Assaad, K Hadi, MF Levine, D Guevara, M Patel, M Tranquille, ... medRxiv, 2024.06. 28.24309592, 2024 | 1 | 2024 |
| Identification of CXCR5 [+] EBV-Specific CD8 [+] T Cells in Peripheral Blood of Pediatric Heart Transplant Recipients Correlates With IL-21 Production and EBV Reactivation C Macedo, K Hadi, D Rowe, J Luce, S Webber, B Feingold, D Metes AMERICAN JOURNAL OF TRANSPLANTATION 15, 2015 | 1 | 2015 |
| Disease Progression in HIV-1 and the Role of Polymorphisms in the Vpr Gene K Hadi University of Pittsburgh, 2012 | 1 | 2012 |
| Whole genome and transcriptome analysis of pancreatic acinar cell carcinoma elucidates mechanisms of homologous recombination deficiency and unravels novel relevant fusion events J Delgado-de la Mora, M Al Assaad, S Karaaslan, K Hadi, A Halima, ... Pathology-Research and Practice 266, 155798, 2025 | | 2025 |